Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0412 ATGAGCGATCACTTGGTGGTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGACCCGGTGGCGCAGCCGCCTTCCGAGCCGTCTCCTCCTCCGGCCCCCGTGAATGCTGACGCTTCCGGGAGCTCCGGCACCGCTCCGGTGGAGGATTGTGACGGAGAGGGCGGCGGCGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAACTTGGAGACGCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCATATCAACCTGGGTATACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACTATTGATATAGGAGGTGGCTGGACAATATCTGGCACACCCTTAGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAAGCAGAACGTCAGTTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGATAATTCTGATGATGATCCATCCAGTTTTTTCTCCCTTTTCTTGCTTCGTGCTGCTGGATTTCTATTACCTTGCTACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAGAGGCTGCAGCACTGGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGACCCCCCACACTACACCAGGAACAAGTATAA 861 0.5343 MSDHLVVFVDRLARPVPVDPVAQPPSEPSPPPAPVNADASGSSGTAPVEDCDGEGGGEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDNSDDDPSSFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTLHQEQV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0412 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 123 IPR013083 -
Gso1g0412 286 MobiDBLite consensus disorder prediction 16 58 - -
Gso1g0412 286 CDD RING_CH-C4HC3_MARCH 68 114 - -
Gso1g0412 286 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 284 IPR033275 -
Gso1g0412 286 Coils Coil 156 176 - -
Gso1g0412 286 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Gso1g0412 286 MobiDBLite consensus disorder prediction 18 35 - -
Gso1g0412 286 Pfam Protein of unknown function (DUF3675) 119 238 IPR022143 -
Gso1g0412 286 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Gso1g0412 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 284 - -
Gso1g0412 286 SUPERFAMILY RING/U-box 66 118 - -
Gso1g0412 286 SMART ringv_2 67 114 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0412 Gso-Chr1 5595232 5599813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0412 67 143 C3H Transcription Factor Family AT2G37950 37.079 2.68e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0412 - - gmx:100812998 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0412 1 5595232 5599813 Gso2g0902 2 10279082 10283383 GST