Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso1g0412 | ATGAGCGATCACTTGGTGGTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGACCCGGTGGCGCAGCCGCCTTCCGAGCCGTCTCCTCCTCCGGCCCCCGTGAATGCTGACGCTTCCGGGAGCTCCGGCACCGCTCCGGTGGAGGATTGTGACGGAGAGGGCGGCGGCGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAACTTGGAGACGCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCATATCAACCTGGGTATACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACTATTGATATAGGAGGTGGCTGGACAATATCTGGCACACCCTTAGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAAGCAGAACGTCAGTTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGATAATTCTGATGATGATCCATCCAGTTTTTTCTCCCTTTTCTTGCTTCGTGCTGCTGGATTTCTATTACCTTGCTACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAGAGGCTGCAGCACTGGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGACCCCCCACACTACACCAGGAACAAGTATAA | 861 | 0.5343 | MSDHLVVFVDRLARPVPVDPVAQPPSEPSPPPAPVNADASGSSGTAPVEDCDGEGGGEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDNSDDDPSSFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTLHQEQV* | 287 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso1g0412 | 286 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 123 | IPR013083 | - | |
Gso1g0412 | 286 | MobiDBLite | consensus disorder prediction | 16 | 58 | - | - | |
Gso1g0412 | 286 | CDD | RING_CH-C4HC3_MARCH | 68 | 114 | - | - | |
Gso1g0412 | 286 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 284 | IPR033275 | - | |
Gso1g0412 | 286 | Coils | Coil | 156 | 176 | - | - | |
Gso1g0412 | 286 | Pfam | RING-variant domain | 68 | 113 | IPR011016 | GO:0008270 | |
Gso1g0412 | 286 | MobiDBLite | consensus disorder prediction | 18 | 35 | - | - | |
Gso1g0412 | 286 | Pfam | Protein of unknown function (DUF3675) | 119 | 238 | IPR022143 | - | |
Gso1g0412 | 286 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 60 | 120 | IPR011016 | GO:0008270 | |
Gso1g0412 | 286 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED | 1 | 284 | - | - | |
Gso1g0412 | 286 | SUPERFAMILY | RING/U-box | 66 | 118 | - | - | |
Gso1g0412 | 286 | SMART | ringv_2 | 67 | 114 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso1g0412 | Gso-Chr1 | 5595232 | 5599813 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso1g0412 | 67 | 143 | C3H Transcription Factor Family | AT2G37950 | 37.079 | 2.68e-08 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso1g0412 | - | - | gmx:100812998 | 496.893 |