Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0407 ATGGAAATCTTCCGGGAGGTACTTCATTTTGTGCAGAAATTCTTTATTTCGCTGTTCACATGGTGCATTACGTACCTGATAAGAGGCTCGTCCAGGAGAATCAATGCTGTGGCTACCATGCCTAATCCAACATTGGCGTCCTCCTCTTCTTTGGCCTATGAATGGACTTACGATGTTTTCCTCAGTTTTAGAGGTGAGGATACCCGCTTGGGTTTTACCGGACACCTTTATCATGCTCTGTGTGAAGTGGGAGTCAACACCTTCATGGATGATCAAGGGCTGAGGAAGGGAGAAGAAATCACACCATTTCTAATGAAGGCAATTCAAGAATCCAGGATTGCTATTGTGATTTTTTCAGAAAACTATGCATCATCAACGTTTTGTTTACAAGAACTTGTGATGATCATGGAATGCTTAAAACATCAGGGCAGGTTGGTCTGGCCTGTTTTTTATGAAGTGGATCCATCTGATGTGCGCCATCAGAAAGGAAGTTATGCAGAAGCACTAGCCAAGCATGAGACAAGAATCAGTGATAAGGACAAGGTGGAAAAATGGAGGTTAGCTTTGCAAAAAGCTGCAAGTCTATCTGGTTGGCATTCCAATCGAAGGTACGAATATGATATCATTCGGGACATCGTTCTAGAGGTCTCTAAAAAGATCAATCGGAACCCTTTACATGTAGCTAAATACCCAGTTGGCTTAGAGTCTCGCGTGCAGAAGGTAAAGTCACTTCTTGATGTTGAGTCAAATGATGGAGTCCACATGGTAGGGATTTATGGAATAGGCGGAATTGGAAAAACAACACTTGCATGTGCAGTGTGCAATTTCGTTGCTGATCAATTTGAAGGTCTTTCTTTTCTTTCTGATGTTAGAGAAAATTCTGAGAAGCATGGACTGGTACACCTTCAGGAGACACTTCTTTCTGATATACTTGAGGAGAAAGACATTAAGTTGGGGAATGAAAAGAGAGGAACTCCAATAATTAAAAGTAGGCTCCGTAAAAAGAAAATTCTTTTGATTTTGGATGATGTTGACAAAATGGATCAATTAGAACATCTTGCTGGTGGACTTCATTCAGTTGATTGGTTTGGTTCTGGGAGCAGAATTATTATAACAACTAGAGATATACATCTGCTAGATTTTTATGGGATTGAAAGAACCTATGAAGTAGATGGATTAAATCAAGAAGAAGCCCTTGAATTGTTCAGCTGGAATGCTTCCAGAAGAAAACAAATTACTCCTAGTTATCAGGAAATTTCAAAAAGAGTAATACAGTATTCTAATGGCCTTCCATTATCTCTAGAAATAATAGGTTCTGATTTATTTGGTAAAACAGTGTTGGAATGTAAGTCAGCATTAGATCATTATGAAACAAATCCTCATGACGATATTCTGAAAATCCTAAAAGTAAGCTATGATGGCTTAAAGGAATATGAGAAGAAAATTTTTTTAGACATGGCTTGCTTCTTTAAAGGATATGAACTTAGTGATGTAAAAAACATACTACATAGTGGTCGTGGCTTAGCTCCAGACTATGCTATCCAGGTGTTAATTGACAAGTGTCTGATAAAAATTGTTCAATGTCGTGTGAGAATGCATAATCTGATTGAGAATATGGGTAAACAAATTGTGCGACAGGAATCACCCACAAATTCTGGTGAACACAGTAGATTATGGTTCTCTAAAGATATTCTTCGTGTTTTAAAAAACAACAAGGGATCCGATAAAACTGAGATCATCATGTTACACTTGCCCAAAGAAAAAGAAGTGCACTGGGATGGAACAGCATTGGAGAAGATGAAAAACCTTAAAATACTGGTGGTAAAAAATGCTCGCTTTTCTAGAGGACCTAGTGCTCTCCCAGAAAGTTTAAGAGTGCTAAAATGGTGTCGATATCCTGAATCTTCGCTGCCTGCTGATTTTGATGCAAAAAAACTTGTCATATTGGATTTGTCTATGAGTTCCATTACGTTCAAGAATCCAATGATCATGATGAAATTTAAGTACTTGATGGAAATGAAGTTGAGTGGTTGCGAATTACTAAAAGAAGTATCTGACATGTCTGGAGCACCAAATTTGAAGAAACTGCATCTTGATAATTGCAAAAATTTAGTTGAAGTTCATGATTCCGTTGGATTCCTTGATAAACTTGAATGCTTGAACCTTAATCACTGCACTAGTCTTAGGGTTCTTCCTCGTGGCATGTACTTAACTTCTCTTAAAACCATGTCCCTTAGGAGATGCACAAGTCTCATGAGTTTTCCAGAAATTTTAGGGAAGATGGAAAACATAAGGTACCTTGATTTGATTGGCAGTGCCATAAGTGTCTTGCCTTTTTCAATTGGAAATCTTGTTGGGCTCACTAGGCTGAATCTGAATAAATGCACTGGGCTAGTTGAACTACCAATTAGTGTTTTTATGCTGCCCAAACTTGAGAACTTGGAAGCTAACTATTGTGATCGGCTTGCACAAGTACGGAATGGAGAAGGTCAAGATCATGAAACGGTGTCTTCAAGTGTTAGGGATGCTAATTTTAACTATTGTTATCTGACAGAGAAGTTTCTTGCTACTCTTCTTCCTTGCTTGTGCAATGTGACATCTTTATCCCTTAATTCCAGCAATATCACAGTCCTTCCATCATCAATCAGTGCCTGTCTCTCCTTGACCGAACTTTATTTGAATGAATGCAAGGAGCTCCGGGAAATCAGAAGCCTGCCACCAAACATAAAATATCTTTCTGCTATCAATTGCAAATCCTTGACTTCCGAGTCTAAGGAAATTTTACTGAATCAGAAACTACATGAGACTGGGGGTACACATTTCAAATTCCCAGGATCTGCTATCCCAAGTTGGTTGAATTACAGTAGAAGGGGCCCATCCCTGCGTTTCTGGTTTCGTAACAAGTTCCCAGCAATTACTCTATGTGTTGTTGGAGTTTTTGGTAGTCTGCTTAAGTGTAAGATGGACCCTATCTTAACTGCCATGATACAGGCCCCAGTGATTACCGTATTTGCTGCTACAAAATATTCAATTCAGACAAATCATACAATTCTGTCTGATCTGTTGATTGAATTTGGCAGTAATAAATTTGAAAGATTCCTTATTGAGAATAAATGGTACAGTGCAGAGATTTCATTTGAGGATATTTATGGAATAACAGACATTGAATGGATGGGAGTACATGTACAGGAACATAAAACAAACATGGCAGATATTCAATTTACAGAGCCCAAGCTTACAATGGTAGACAGTAAATTCTGGATTCACTTTATTACTGATGTCGGAAAACAATTGAAATGTGGTGATGCCTATTACTGTTATCTCCCACCATTGAGACCAAATGAAGGAGGCGAAGACTATGACTGGCTTCAAGTGTACATTCTGATTCTCTCTGTGGGACTCCATTGTCTCCTTCTCTGA 3420 0.386 MEIFREVLHFVQKFFISLFTWCITYLIRGSSRRINAVATMPNPTLASSSSLAYEWTYDVFLSFRGEDTRLGFTGHLYHALCEVGVNTFMDDQGLRKGEEITPFLMKAIQESRIAIVIFSENYASSTFCLQELVMIMECLKHQGRLVWPVFYEVDPSDVRHQKGSYAEALAKHETRISDKDKVEKWRLALQKAASLSGWHSNRRYEYDIIRDIVLEVSKKINRNPLHVAKYPVGLESRVQKVKSLLDVESNDGVHMVGIYGIGGIGKTTLACAVCNFVADQFEGLSFLSDVRENSEKHGLVHLQETLLSDILEEKDIKLGNEKRGTPIIKSRLRKKKILLILDDVDKMDQLEHLAGGLHSVDWFGSGSRIIITTRDIHLLDFYGIERTYEVDGLNQEEALELFSWNASRRKQITPSYQEISKRVIQYSNGLPLSLEIIGSDLFGKTVLECKSALDHYETNPHDDILKILKVSYDGLKEYEKKIFLDMACFFKGYELSDVKNILHSGRGLAPDYAIQVLIDKCLIKIVQCRVRMHNLIENMGKQIVRQESPTNSGEHSRLWFSKDILRVLKNNKGSDKTEIIMLHLPKEKEVHWDGTALEKMKNLKILVVKNARFSRGPSALPESLRVLKWCRYPESSLPADFDAKKLVILDLSMSSITFKNPMIMMKFKYLMEMKLSGCELLKEVSDMSGAPNLKKLHLDNCKNLVEVHDSVGFLDKLECLNLNHCTSLRVLPRGMYLTSLKTMSLRRCTSLMSFPEILGKMENIRYLDLIGSAISVLPFSIGNLVGLTRLNLNKCTGLVELPISVFMLPKLENLEANYCDRLAQVRNGEGQDHETVSSSVRDANFNYCYLTEKFLATLLPCLCNVTSLSLNSSNITVLPSSISACLSLTELYLNECKELREIRSLPPNIKYLSAINCKSLTSESKEILLNQKLHETGGTHFKFPGSAIPSWLNYSRRGPSLRFWFRNKFPAITLCVVGVFGSLLKCKMDPILTAMIQAPVITVFAATKYSIQTNHTILSDLLIEFGSNKFERFLIENKWYSAEISFEDIYGITDIEWMGVHVQEHKTNMADIQFTEPKLTMVDSKFWIHFITDVGKQLKCGDAYYCYLPPLRPNEGGEDYDWLQVYILILSVGLHCLLL* 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0407 1139 Gene3D Ribonuclease Inhibitor 565 751 IPR032675 -
Gso1g0407 1139 SUPERFAMILY Toll/Interleukin receptor TIR domain 47 198 IPR035897 -
Gso1g0407 1139 SMART AAA_5 252 393 IPR003593 -
Gso1g0407 1139 SMART till_3 56 195 IPR000157 GO:0007165
Gso1g0407 1139 ProSiteProfiles TIR domain profile. 55 220 IPR000157 GO:0007165
Gso1g0407 1139 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 66 1046 IPR044974 GO:0006952
Gso1g0407 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 485 IPR027417 -
Gso1g0407 1139 SUPERFAMILY L domain-like 578 931 - -
Gso1g0407 1139 Pfam NB-ARC domain 235 472 IPR002182 GO:0043531
Gso1g0407 1139 Gene3D - 220 383 IPR027417 -
Gso1g0407 1139 PANTHER ARCHAEAL ATPASE 66 1046 - -
Gso1g0407 1139 Gene3D - 392 476 IPR042197 -
Gso1g0407 1139 Gene3D - 50 219 IPR035897 -
Gso1g0407 1139 PRINTS Disease resistance protein signature 255 270 - -
Gso1g0407 1139 PRINTS Disease resistance protein signature 331 345 - -
Gso1g0407 1139 PRINTS Disease resistance protein signature 427 441 - -
Gso1g0407 1139 PRINTS Disease resistance protein signature 735 751 - -
Gso1g0407 1139 SUPERFAMILY "Winged helix" DNA-binding domain 463 569 IPR036390 -
Gso1g0407 1139 Pfam TIR domain 57 221 IPR000157 GO:0007165
Gso1g0407 1139 Gene3D Ribonuclease Inhibitor 752 936 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0407 Gso-Chr1 5503577 5508892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0407 37 891 WRKY Transcription Factor Family AT4G12020 30.045 5.91e-83 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0407 - - gmx:100814790 2246.08