Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0406 ATGATGGAAGAGAGAAATAATGATGCTGAGAAACTTGATGAAGTTATGCTACCGGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGAAAGATTCAGCAACGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATCTACAAATTTGACCCTTGGGATCTTCCAAAGTTGGCCACCACAGGAGAGAAAGAGTGGTATTTTTACTGTCCAAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCAACTGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCCCTAGTCTTTTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACTGACTCACTCTCCCCAAAGTACATAGACAAGACCATTCCTGCTAATGAATCTTGGGCTATCTGCAGGATATTCAAGAAAATCAATGCTACAGCTCAAAGAACTTTATCTCAATCTTGGGCCTCTTCCCTACCTCCTGATACAAGAACCTCTGATCATCATATCCAAACCAAAGATCAAGACAGCACTACTCAGTTTTGTTCAGACAACATGCCAATGACAAATAAAACTACCTTAACCAGCCAGTTCTGTAATAACAATTACAATGATTCACAACCCTTACCCACTAATAGTAGTAGTAGTCCTCTTTGTCCCTTAGATGTTGCCTCATACAAATCCATCATTAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCTAATGAAGACCTTAGAACTAGCTTGCTATTCTCACCCCCCTTTGAAACATCAGATGCTAATCCCAAATCTACAATGGTCGACGTTTCTTCCATGTTGTTGAGCATGCCATCCTCAGTGCTTGGAGATTTTAACAAGACTACTTCAGAAGACACAAATACAGCTTCAAACTTTGGTGTATTGCAAGAGCACTGTAGTGGCTACCCAATACCATTTCTACCTGAGATGCAAACCACATTTGGTAACCAACAACAACAATATTGTGATAATATTAATGCATTGGTAAAGGGTCCTAATGTGAATGTGCCTCGTGTTGATGACCAAGAGTTGGAGTTGGAGACAGTAGTACAACGATCCATTGGGTTTCCATTAAGTGCTACTATGCCTTTGAATATTGTCGATGCATGGAAGTCAAATAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATATGCCATCTAGTTATTATTCCACAACTAAGTGTTATACTTAG 1317 0.4093 MMEERNNDAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKFDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKTIPANESWAICRIFKKINATAQRTLSQSWASSLPPDTRTSDHHIQTKDQDSTTQFCSDNMPMTNKTTLTSQFCNNNYNDSQPLPTNSSSSPLCPLDVASYKSIINPLLYKAFDHFPISNEDLRTSLLFSPPFETSDANPKSTMVDVSSMLLSMPSSVLGDFNKTTSEDTNTASNFGVLQEHCSGYPIPFLPEMQTTFGNQQQQYCDNINALVKGPNVNVPRVDDQELELETVVQRSIGFPLSATMPLNIVDAWKSNNLLWDTSSFPCDMPSSYYSTTKCYT* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0406 438 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
Gso1g0406 438 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 436 - -
Gso1g0406 438 PANTHER PROTEIN FEZ ISOFORM X1 2 436 - -
Gso1g0406 438 ProSiteProfiles NAC domain profile. 16 173 IPR003441 GO:0003677|GO:0006355
Gso1g0406 438 MobiDBLite consensus disorder prediction 185 215 - -
Gso1g0406 438 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Gso1g0406 438 Gene3D NAC domain 25 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0406 Gso-Chr1 5468431 5470796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0406 2 381 NAC Transcription Factor Family AT1G26870 50.754 4.18e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso1g0406 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0406 - - gmx:100170721 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0406 1 5468431 5470796 Gso2g0898 2 10225786 10228183 GST