Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0396 ATGAACTATGACCCTTCTTTGTCTCGTAATCTTGGGTTCCAAAAGAAGGAGAAGATGAACGTGGATCTGGAATCATTGGCAGAGGCAACTTCTGGGGCCATAGGATCACTGATCAGCACCACTATTCTCTACCCACTTGACACCTGCAAGACCAAGTACCAGGCTGAGGCTCGTTCCTCAGGTCGAATAAAATACAGGAATCTCACTGATGTATTATTGGAGGCAATATCTAACCGTCAGGTGCTTTCACTTTACCAGGGCCTTGGAACAAAGAATCTTCAATCCTTCATTTCACAATTTGTCTACTTCTATGGATACAGCTATTTTAAAAGGCTGTATCTAGAAAAAAGCGGTTATAAATCCATTGGAACAAAAGCAAACTTGGTTATTGCTGCTGCTGCTGGGGCTTGCACAGCCATTGCGACTCAGCCCCTGGATACAGCCTCTTCAAGGATGCAGACAAGTGAATTTGGAAAGTCTAAAGGGCTACTGAAGACCCTTACAGAAGGAACCTGGAGTGATGCATTTGATGGCCTCGGTATTTCCTTGCTGCTGACATCAAACCCTGCAATTCAGTATACGGTGTTTGATCAGCTGAAGCAACGAGCACTGAAGAATAAACAAAACAATGCTGATAAAGGAACATCTCCAGCATCCCTTTCCGCATTTATGGCCTTTCTTTTAGGTGCAATTTCAAAGAGCATTGCTACCTGTCTAACATATCCAGCTATCAGGTGCAAAGTTATCATTCAAGCTGCAGACTCGGCTGAACCAACCTCCAAAACAATGATAAAATCACAGAAAACAGTGTCTAGTGTTCTCTATGGAATATGGAAAAGGGAGGGCTTACTGGGATATTTCAAAGGATTGCATGCTCAGATCTTAAAAACTGTTTTGAGCTCAGCACTGCTCTTAATGATCAAGGAAAAGATCTCTGCTACTACCTGGGTGCTTATCCTTGCACTTAAAAGGTACCTATTACTTCCAAGGGGTAGGATTAAGAACTTGTAA 1011 0.4273 MNYDPSLSRNLGFQKKEKMNVDLESLAEATSGAIGSLISTTILYPLDTCKTKYQAEARSSGRIKYRNLTDVLLEAISNRQVLSLYQGLGTKNLQSFISQFVYFYGYSYFKRLYLEKSGYKSIGTKANLVIAAAAGACTAIATQPLDTASSRMQTSEFGKSKGLLKTLTEGTWSDAFDGLGISLLLTSNPAIQYTVFDQLKQRALKNKQNNADKGTSPASLSAFMAFLLGAISKSIATCLTYPAIRCKVIIQAADSAEPTSKTMIKSQKTVSSVLYGIWKREGLLGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILALKRYLLLPRGRIKNL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0396 336 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 314 IPR018108 -
Gso1g0396 336 Gene3D Mitochondrial carrier domain 167 317 IPR023395 -
Gso1g0396 336 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 19 335 IPR045900 GO:0005347|GO:0006635|GO:0015217
Gso1g0396 336 SUPERFAMILY Mitochondrial carrier 25 310 IPR023395 -
Gso1g0396 336 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1 19 335 - -
Gso1g0396 336 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 202 IPR018108 -
Gso1g0396 336 Pfam Mitochondrial carrier protein 122 206 IPR018108 -
Gso1g0396 336 Pfam Mitochondrial carrier protein 24 116 IPR018108 -
Gso1g0396 336 Pfam Mitochondrial carrier protein 220 312 IPR018108 -
Gso1g0396 336 Gene3D Mitochondrial carrier domain 5 166 IPR023395 -
Gso1g0396 336 PRINTS Mitochondrial carrier protein signature 38 56 IPR002067 GO:0055085
Gso1g0396 336 PRINTS Mitochondrial carrier protein signature 85 103 IPR002067 GO:0055085
Gso1g0396 336 PRINTS Mitochondrial carrier protein signature 131 153 IPR002067 GO:0055085
Gso1g0396 336 ProSiteProfiles Solute carrier (Solcar) repeat profile. 23 112 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0396 Gso-Chr1 5302767 5306725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0396 41 329 Chloroplast and Mitochondria Gene Families AT1G25380 27.687 1.21e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0396 - - gmx:100787682 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0396 1 5302767 5306725 Gso2g0889 2 10145626 10149570 GST