Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0393 ATGGAATTGGAGGCTGATCATCAAAATGGGATCCGAAGCAGGCCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTTGATGACGTCACCGAACAACCTTGTTCCACCACCAGCGTGGTAACTACTGCTGCTGCTACTATTACTTCTGGTAACAACGACCTCCACGTGGCGGAGCAGTCGAAGAAGCCTCCGCCAAAGCGGAGTTCCACGAAAGACCGCCACACGAAGGTCGATGGGCGAGGCCGCCGGATTCGCATGCCAGCGGCCTGCGCCGCAAGAGTGTTCCAACTCACGCGTGAGCTGGGACATAAGTCTGATGGTGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCGGCGGTCATCGCTGCCACAGGCACCGGCACCATTCCCGCCAACTTCACCTCCCTTAACATCTCCCTCCGCAGCTCCGGCTCCACCATGTCGGCGCCTTCTCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACCTCAGCCGCCGCTGCTTCCGCGGCGGCGGTGGCACAGCTAAGGAGCCGCGCGGAGTGGGACCGGAACATGAGCATGGTGATGGAGGATTCTCGTAGGAGCATGCTGGAGAACACTTCTTCCATCTCCGCAATTTTGAATTTCAACCCTATGGGTAACGTCAATGTAATTCAACAAGCGAAACAAGAGCTTCGAGAAGAATCCGCCGCCGCCGGTGGCGGCGGCAGTCTTGATTCGGTGGCTTCGGATTCCGATGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAGCTATCACAAATGGGAAGCTACTTGATACAATCAAGCACAGGGTCGCTTCCGTCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCCGGTCACGGCAACCAAGCCATGAGTGGTGGTGGTGGCAGCGATGGTAGCAGCGATAATCCCATTTGGGCAATTCCCTCTGTTGGGAATAGCGGTGTGTATAGAGGAGCTATGTCTGCCCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGAACCTTATCCCCGGAGCTCAACTAGGTTCCGCCATGGTTGGGGGCGGAAGTGGTGGCGGCAACAGTGGTTCTCAACTTCTAAGTGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGGCAGATTCCGGCTAACGGCGTCTCGGAGTCTCCGGCCAGCGCCGGGCAACCTCACGGCGGAGACGATGGACGTGATTCCTCCGGTCAACATTCCTGA 1263 0.5653 MELEADHQNGIRSRPNFPLQLLEKKDVDDVTEQPCSTTSVVTTAAATITSGNNDLHVAEQSKKPPPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSAAAASAAAVAQLRSRAEWDRNMSMVMEDSRRSMLENTSSISAILNFNPMGNVNVIQQAKQELREESAAAGGGGSLDSVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPSSHASNTAAFWMVAGHGNQAMSGGGGSDGSSDNPIWAIPSVGNSGVYRGAMSAPGGIHFMNFASPMNLIPGAQLGSAMVGGGSGGGNSGSQLLSESNLGMLAALNAYRQIPANGVSESPASAGQPHGGDDGRDSSGQHS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0393 420 MobiDBLite consensus disorder prediction 394 420 - -
Gso1g0393 420 MobiDBLite consensus disorder prediction 60 81 - -
Gso1g0393 420 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Gso1g0393 420 MobiDBLite consensus disorder prediction 232 266 - -
Gso1g0393 420 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 4 420 - -
Gso1g0393 420 MobiDBLite consensus disorder prediction 51 81 - -
Gso1g0393 420 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 420 IPR005333 GO:0003700
Gso1g0393 420 Pfam TCP family transcription factor 70 228 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0393 Gso-Chr1 5252477 5254623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0393 15 354 TCP Transcription Factor Family AT3G47620 38.038 3.77e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso1g0393 TCP 5.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0393 - - gmx:100809966 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0393 1 5252477 5254623 Gso2g0887 2 10117806 10119765 GST
Gso1g0393 1 5252477 5254623 Gso5g0227 5 2385895 2387941 PCT
Gso1g0393 1 5252477 5254623 Gso17g0834 17 7828907 7831750 PCT