Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0385 ATGTCTTTTGCTTATGACTTTTTATTAATGCATAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACTCCTCACCATGATGATCATCATCATCAACCTCCACCATCCCTCACCTCAATTCTACCAACGTGTGCACCTCAAGAATATCATGGGGGAGTGACCTTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGGATTGAGCATGGAGAAGAGGTCAATGCCGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAGAAGAGGAGGCTCAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAGAGGAAAATGCAGCTTGCAAGAGCACTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAAATATTGGCACTGAAAAGTAGAGAACCAACTGAATCCATAAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCATTCTACACATCAGCAAAGCAGACCCCTCTTTCCTCCTTCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACCTCTTCAAGACCAGACCTTCCATCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTGGCATGGATGATCAATCGGGGTTTTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 900 0.44 MSFAYDFLLMHKTCNEMAFFPANFMLQTPHHDDHHHQPPPSLTSILPTCAPQEYHGGVTFLGKRSMSFSSGIEHGEEVNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPHSTHQQSRPLFPPSSARPAGVAQLFQTSSRPDLPSCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0385 299 SMART HOX_1 92 153 IPR001356 GO:0003677
Gso1g0385 299 MobiDBLite consensus disorder prediction 197 240 - -
Gso1g0385 299 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Gso1g0385 299 MobiDBLite consensus disorder prediction 194 247 - -
Gso1g0385 299 Gene3D - 86 155 - -
Gso1g0385 299 SUPERFAMILY Homeodomain-like 84 151 IPR009057 -
Gso1g0385 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 299 IPR045224 GO:0003700
Gso1g0385 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 15 299 - -
Gso1g0385 299 Coils Coil 141 189 - -
Gso1g0385 299 CDD homeodomain 94 150 IPR001356 GO:0003677
Gso1g0385 299 Pfam Homeobox associated leucine zipper 149 189 IPR003106 GO:0006355|GO:0043565
Gso1g0385 299 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Gso1g0385 299 MobiDBLite consensus disorder prediction 76 98 - -
Gso1g0385 299 PRINTS Lambda-repressor HTH signature 120 129 IPR000047 GO:0003677
Gso1g0385 299 PRINTS Lambda-repressor HTH signature 129 145 IPR000047 GO:0003677
Gso1g0385 299 Pfam Homeodomain 94 147 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0385 Gso-Chr1 4926355 4929150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0385 13 299 Homeobox Transcription Factor Family AT1G69780 63.576 2.00e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso1g0385 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0385 K09338 - gmx:100814080 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0385 1 4926355 4929150 Gso18g1024 18 16762515 16765066 PCT