Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0377 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCGTCGTCAAAGTCTACTTCATCAAAGAAGAATGATATTTTTAAACCTTCTAGTGACAAGGATGCGCTGGTGTCGTCTGAGGTGCCCGTGTCTGATCCAACCGTTGATTCGTTGCAGATATCCGCACCAATATCTGGAGCTAATGATTCTAAAGGAGTGCTTTCCGAAAAGGAGGTAGTTAGTAGGTCATCACATGATAGGGATGTTCTTTCAACTGGAGTTGAAGAAGCTAAGGTGCAAGATGTTGCTAATTTTGGATCTCAAGAGGATCTTGAGAAACTCCAGCTTACAGAAGCAGCTATAAAAGTTCAGGCTGCTTGTAGAAGCTATCTGGCTCGTCAAACATTTAAAAAACTCGAAGGTGTCATACAACTACAAGCTTTTATTCGTGGCCACTTGGTTCGAAGACAAGCTGTTTCTGCATTATATTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATATTGGGCTTGCAATCCAAAAAATTCGTAAGGATACCCATTGCTCAAATTCTGTTCGGGTAGCTTCATCCACACAGGCAGAGAAGCTGTCTGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCACTCAACAGTGATCCTGGAGAACCTAACATGGTTCGGAAGTGGCTTGACTATTGGACAAGGTCACACTTTTGGGCACCTCTTCCTGAATTAGAAAAGAAACTTGGCTCAGCGTCTGATGAGAAAAATGGCAGTTCTCAGACAGTTCAAAAGGGGCAAATTAAAAAAATTACTCGGAAATATCCGGCTGTGAAAGCTAAGAATGGCTCAAATTTAGGTTCTAACAAATCTAAACAGTGTCCAAAAAAGGATTCAAGCCACCCATTGCCTTCAGCGCAGGAACACCCACAGAAAGAAACGGAGAAAAGTAGTTTTGAAAAGACTCACGCACATAATGTTTCAAATGGATCTGAGGTTGTTAGTGAAAAAAGGAAATCTGGCAATAAAAAGATTTTGGATCATGCTGTCACTGATGTTTCAGAGCAGGGCCCAAATGCCTCTTCAGAGAAAAAGAAAGATTTGACCGTGCCAAAGTCAAAAGAGTCTGATCCTGAGAAAGGTGATGGACAGGAAGCAAAAGACAAGAATGATAATGAGCTACATCGTTACCCTGTTGCCGTCTTAAAGACAACTGTGATGAAGGGTGAAAACGAAGGATATCAAGGAGTCAGTGAGAATTTGAATGGTGGTGACAATTGCATGAGTAACAATAGCCAAAGAAGAGCTTCATTACCTGCTAACTTTAATGATCAAGAGAATGAGTTATATAACACTCCTGTTACTCCAAGACTGCCAAGTTATATGGCTCCTACTGAATCAGCAAAAGCTAGGCTAAGAGGACAAGGCTCTCCAAGATTTGCTAATGATTTGGTAGACAAAAACAGTACAACCAGGCGGCATTCACTTTCATCTTCACTTAATGGCAGGTCAGGTTCATTTTCCCCAAGAGCTGAAAAGCTGATAGGCGTAAGCGGCAGAGGAGGGATAAAGTCTGATAGATCTCTGTCATCTTCAAGGGATGGGACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1692 0.419 MGKGRSPGKWFKNLLLGKKSSSKSTSSKKNDIFKPSSDKDALVSSEVPVSDPTVDSLQISAPISGANDSKGVLSEKEVVSRSSHDRDVLSTGVEEAKVQDVANFGSQEDLEKLQLTEAAIKVQAACRSYLARQTFKKLEGVIQLQAFIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSDIGLAIQKIRKDTHCSNSVRVASSTQAEKLSENVFVCKLLASSPYAVPLSLNSDPGEPNMVRKWLDYWTRSHFWAPLPELEKKLGSASDEKNGSSQTVQKGQIKKITRKYPAVKAKNGSNLGSNKSKQCPKKDSSHPLPSAQEHPQKETEKSSFEKTHAHNVSNGSEVVSEKRKSGNKKILDHAVTDVSEQGPNASSEKKKDLTVPKSKESDPEKGDGQEAKDKNDNELHRYPVAVLKTTVMKGENEGYQGVSENLNGGDNCMSNNSQRRASLPANFNDQENELYNTPVTPRLPSYMAPTESAKARLRGQGSPRFANDLVDKNSTTRRHSLSSSLNGRSGSFSPRAEKLIGVSGRGGIKSDRSLSSSRDGTEKLIQPQWRR* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0377 563 PANTHER IQ-DOMAIN 5-RELATED 1 560 - -
Gso1g0377 563 MobiDBLite consensus disorder prediction 376 413 - -
Gso1g0377 563 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 560 - -
Gso1g0377 563 MobiDBLite consensus disorder prediction 17 31 - -
Gso1g0377 563 MobiDBLite consensus disorder prediction 508 523 - -
Gso1g0377 563 SMART iq_5 114 136 IPR000048 GO:0005515
Gso1g0377 563 SMART iq_5 137 158 IPR000048 GO:0005515
Gso1g0377 563 SMART iq_5 162 184 IPR000048 GO:0005515
Gso1g0377 563 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Gso1g0377 563 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Gso1g0377 563 Pfam IQ calmodulin-binding motif 141 156 IPR000048 GO:0005515
Gso1g0377 563 MobiDBLite consensus disorder prediction 16 62 - -
Gso1g0377 563 MobiDBLite consensus disorder prediction 271 285 - -
Gso1g0377 563 MobiDBLite consensus disorder prediction 267 414 - -
Gso1g0377 563 ProSiteProfiles IQ motif profile. 137 166 IPR000048 GO:0005515
Gso1g0377 563 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Gso1g0377 563 MobiDBLite consensus disorder prediction 541 555 - -
Gso1g0377 563 MobiDBLite consensus disorder prediction 482 563 - -
Gso1g0377 563 Gene3D - 112 161 - -
Gso1g0377 563 MobiDBLite consensus disorder prediction 353 367 - -
Gso1g0377 563 Pfam Protein of unknown function (DUF4005) 462 542 IPR025064 -
Gso1g0377 563 MobiDBLite consensus disorder prediction 325 339 - -
Gso1g0377 563 MobiDBLite consensus disorder prediction 299 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0377 Gso-Chr1 4775966 4781282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0377 4 563 IQD Protein Family AT1G14380 34.861 9.71e-79 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0377 - - gmx:100800548 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0377 1 4775966 4781282 Gso5g0236 5 2458250 2465128 PCT
Gso1g0377 1 4775966 4781282 Gso17g0826 17 7750629 7757796 PCT