Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0372 ATGAAGAGATCATATACAGTACTAGTAATGGAAGATAATGACTTCTTGGATTCAAACGGTGATGAAGAGATCGATGTGAAGGATCAAAATCTTGAATCAGCTAAAGGGGAAAAGGGAGAGACTAGAGAAGAAAACAAGATGTTAGAGTTCTATGGAATCCTTCATCACGATAAACCTGATGATGCTACAAATGCTAAAGGTGTGTTTAGCCATATTGAGGAAAACGAAGAAAGTGAACTTGTGTCACTTTCTCTTGGGATATCAATATCTAAAGGCAAGCCTAGCAAGAATGAGAAAATGATTAATAATGGAATTGAAAAGAGAGAAGATGAGGATGTGCATAAACGACTTGTACTTGGGTTAGATATCAATTTGGACCCTGTAGATCAAGATGAATTAGCTGCAAATAATTCCACCCCTGAAAGTAGCTTTGGTGAGGGAGGGAAGGAAGATGAACCAACTGAGATGTGGCCACCCAGTAAAGTTTCGAAGACAATGAAAAGTGAGGATAAAAGTGAAGCTTCACCACATTATCAGCCCAAGAAGACTAGGGTTTCTATTAGAGCCAGATGTGATACCCAAACGATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAATGGCCAAAGGAAATCCATGCCCCCGAGCTTACTATCGATGCACTGCTTCTCCATCTTGCCCTGTAAGAAAGCAGGTGCAAAGATGTGCTGAAGACATGTCCATATTGATTACCACCTATGAAGGAACACACAATCACCCTCTTCCTATGTCAGCCACTGCAATGGCCTGCACAACTTCTGCTGCAGCTTCCATGCTTCAATCTCCCTCATTGAGTTCACAACATGGACTAGTCGATTCAGCTATATCCTCCATCATCAACTCCAGTGCTGCTAATTACTACAATCCTAATAATGCTCTAAACTTCTCCACACACCAAGTTTCTAGACCAAACCAATTCTACTTCTCCAACTCATCCATTTCAACCTTGAATTCTCACCCTACAATCACTCTGGACCTTACAGCACCCCCAACTTCCTCAAACTCAAGCTTCACTCACATGCCAAAATACTCATCAACAAACCTGAATTTCTCCTCTGGTTTCTCTCCTCTACATTCTAGCATGCCTCAATCACCTTGGAGCAGTTATAATTACTTCAATTCTGGAACACTTTCTCAAAATAGAAAACATGGTGGTAATTACTTGTTAAACACTGGAAATCAAAATCAACCACATTCTTTAGGAAATCTCCATCAACCTATTTACATGAGAAGCAATACCATTTCTCAGCATTCTTTGCCTGATCCCATTGTTGCTGCAACCAAGGCAATCACAAGTAACCCAAAGTTTCAATCAGCACTAGCAACTGCTCTCACAACATATGTTGGCAATGAAGCTGGTGGTGGTAGGTTAAGAGAAAATCATGTTCTTGAGAGTGCAGAACTGATGAACTTAAAGCTATGTAGTGAAAATAGCATAGGAAACTCAAGTATAGTTCAACTACCACTACTGGAGCAATGGAAGTGA 1530 0.4046 MKRSYTVLVMEDNDFLDSNGDEEIDVKDQNLESAKGEKGETREENKMLEFYGILHHDKPDDATNAKGVFSHIEENEESELVSLSLGISISKGKPSKNEKMINNGIEKREDEDVHKRLVLGLDINLDPVDQDELAANNSTPESSFGEGGKEDEPTEMWPPSKVSKTMKSEDKSEASPHYQPKKTRVSIRARCDTQTMNDGCQWRKYGQKMAKGNPCPRAYYRCTASPSCPVRKQVQRCAEDMSILITTYEGTHNHPLPMSATAMACTTSAAASMLQSPSLSSQHGLVDSAISSIINSSAANYYNPNNALNFSTHQVSRPNQFYFSNSSISTLNSHPTITLDLTAPPTSSNSSFTHMPKYSSTNLNFSSGFSPLHSSMPQSPWSSYNYFNSGTLSQNRKHGGNYLLNTGNQNQPHSLGNLHQPIYMRSNTISQHSLPDPIVAATKAITSNPKFQSALATALTTYVGNEAGGGRLRENHVLESAELMNLKLCSENSIGNSSIVQLPLLEQWK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0372 509 MobiDBLite consensus disorder prediction 133 185 - -
Gso1g0372 509 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 10 509 IPR044810 GO:0003700
Gso1g0372 509 SMART WRKY_cls 196 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0372 509 Gene3D WRKY domain 181 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g0372 509 ProSiteProfiles WRKY domain profile. 191 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0372 509 SUPERFAMILY WRKY DNA-binding domain 189 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g0372 509 MobiDBLite consensus disorder prediction 164 178 - -
Gso1g0372 509 Pfam WRKY DNA -binding domain 197 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0372 509 PANTHER WRKY TRANSCRIPTION FACTOR 72B 10 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0372 Gso-Chr1 4711945 4718189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0372 25 344 WRKY Transcription Factor Family AT5G15130 43.988 2.38e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso1g0372 WRKY 2.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0372 - - gmx:100797911 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0372 1 4711945 4718189 Gso5g0239 5 2484078 2490451 PCT
Gso1g0372 1 4711945 4718189 Gso17g0823 17 7724460 7729340 PCT
Gso13g0871 13 23011026 23014864 Gso1g0372 1 4711945 4718189 PCT
Gso17g0348 17 3139026 3143878 Gso1g0372 1 4711945 4718189 PCT