Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0366 ATGGCAAAAATTCATAATTTCTACCTTTTAACCTGTTTGGTAGTCATGATACCTACCTTGTATGCCAATGTCAAAGAGGATGAAGCATATTGGAAGAGGCAAAGTGAAGTACTTCTTGTTGATTCATATTGGCAGGAAAGAGCATCAATTGCTGAAAAAGAGAACCAGCAAGCTTATACTTCTGACCCATATTCACTCACCAAGAACTTGACCTTTAGTGTTAGCGAAATCATAATAGGTGAGAAGAATGGAAGAAGGAATTTGAGGGGAAGAGGTGGTAAATGCATGGCAACAAACCCAATTGACAGGTGCTGGAGGTGTGATCCCAACTGGGCAAACAATCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGAAACACTATTGGTGGAAAGAATGGTCCATTCTATGTGGTAAACAGTAGTTTAGATAATGACATGGTGAATCCTGCTCCTGGTACCCTTAGGCATGCAGTTACAAGAAGTGGACCCTTGTGGATCATCTTTGCTCGTAGCATGAACATTAGGCTCAGCCAGGAGCTCATTATGACAAGTGACAAGACCATTGATGGAAGAGGAGTTGATGTCTACATTGCTAATGGGGCTGGTATTACCATCCAGTTCATCAAGAATGTGATCATCCATGGAATCAAAATTTTTAACATTCAGGTTGGCAATGGTGGACTTATTAGAGATTCTGAGACCCACTATGGTTTTAGGACTTATAGTGATGGTGATGGCATTTCCATCTTTGGCTCCAGCAATGTTTGGATTGACCATGTTTCCATGAGAAATTGCAAAGATGGATTGATAGATGCCATTCAGGGTTCCACTGCTATTACCATCTCTAATGGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGTGCTAGTGACAGCTATGATGGCGATAAGATAATGCAGATCACATTGGCATTCAACCACTTTGGCAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATATGGTTTTGTCCATGTGGTTAACAACGATTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACCATTATTAGTGAGGGCAACAGATTCATAGCCCCTAACAACGTATATGCTAAAGAGATAACAAAGAGGGAGTACTCACCGGAGCAAGAGTGGAAAAACTGGCAATGGAGATCAATCAATGATGAGTACATGAATGGAGCATTTTTCAGAGAAGGTGGTTCTCAGATAACAGACAGGCCGTTCTCAAGGCAGGACATGATAACAGCAAAGCCTGGATCATACGTGGGAAGGCTCACTCGTTATGCTGGAAGCCTTAGGTGCATTGTTGGAAAGCCTTGTTGA 1347 0.4224 MAKIHNFYLLTCLVVMIPTLYANVKEDEAYWKRQSEVLLVDSYWQERASIAEKENQQAYTSDPYSLTKNLTFSVSEIIIGEKNGRRNLRGRGGKCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTIGGKNGPFYVVNSSLDNDMVNPAPGTLRHAVTRSGPLWIIFARSMNIRLSQELIMTSDKTIDGRGVDVYIANGAGITIQFIKNVIIHGIKIFNIQVGNGGLIRDSETHYGFRTYSDGDGISIFGSSNVWIDHVSMRNCKDGLIDAIQGSTAITISNGHFTDHNEVMLFGASDSYDGDKIMQITLAFNHFGKRLVQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNVYAKEITKREYSPEQEWKNWQWRSINDEYMNGAFFREGGSQITDRPFSRQDMITAKPGSYVGRLTRYAGSLRCIVGKPC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0366 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Gso1g0366 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Gso1g0366 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Gso1g0366 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Gso1g0366 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Gso1g0366 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Gso1g0366 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Gso1g0366 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Gso1g0366 448 Pfam Pectate lyase 183 364 IPR002022 -
Gso1g0366 448 Pfam Pectate lyase, N terminus 40 88 IPR007524 GO:0030570
Gso1g0366 448 Gene3D - 98 441 IPR012334 -
Gso1g0366 448 PANTHER PECTATE LYASE 18-RELATED 6 448 IPR045032 GO:0030570
Gso1g0366 448 SUPERFAMILY Pectin lyase-like 99 439 IPR011050 -
Gso1g0366 448 SMART amb_all 173 370 IPR002022 -
Gso1g0366 448 PANTHER PECTATE LYASE 6 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0366 Gso-Chr1 4669266 4672323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0366 34 448 Polysaccharide Lyase AT1G14420 60.739 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0366 K01728 - gmx:100796307 913.679