LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso1g0363	ATGCCGATGGAGCTGGAGCTAGGTTCAACAACTATCCAGCGATCCTTCAACACGCGCTACACGCGCCACGCGCGCGACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCTCCATCCCTGGCCACCCCATCGTCTTCGCCAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGGCCCGTGAAGTCCTGGGCCGACCCGCCGCCATCTTCCAGGGCCCGCGAACTTCGAGAAAATCTGTCATTGAAATTCGCGAGGCCGTTAGAGAGGAGCGAAACGCGCAGGTCGTTCTGCTCAACTACCGCAAAGACGGCACGCCGTTTTGGATGCTTTTTCGTGTTTGCCCCGTTTTCAGCAGCGACGGTGGCGCCGTCGTGCACTTTGTTGCCGTACAGGTGCCGCTTCAGAAAAAGGAAGGGTCTGGAGTGAGGGATTTCGGGTTCGGGTGCTGTCGGAAGGAAGTATGCGCCGATTCGTTGGCGGAGATTGGTCGCGTTTGTTCATTAGAGCAAGTGCTGGAACCTGACGTTAGAGAATTGGAGAGAGAAGAGCCGTGTGAGGCAAGTGATGAGGAGAAGCGTAGTGCAGTTAATGCTATGGACAATATATTTTCTGTGCTAACCCATTATAGTGAGGCGACGGGCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAAAAATGAAGTTTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCGACATTACATCTGATAAGGGAGAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGGCAGCTTAATGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGTGGGATCTTCCAAGTCGTAG	1167	0.4919	MPMELELGSTTIQRSFNTRYTRHARDSLDELPDSFTITDPSIPGHPIVFASPGFLKLTGYAAREVLGRPAAIFQGPRTSRKSVIEIREAVREERNAQVVLLNYRKDGTPFWMLFRVCPVFSSDGGAVVHFVAVQVPLQKKEGSGVRDFGFGCCRKEVCADSLAEIGRVCSLEQVLEPDVRELEREEPCEASDEEKRSAVNAMDNIFSVLTHYSEATGRLVCQKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPRLSDMPIVYASDAFLKLTGYAKNEVLGRNCRFLGGTDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKVAYFVGVQIEDSNKNDDSHCLSPEKRQLNVVGVVKVAVRSLSMTVGSSKS*	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso1g0363	388	SUPERFAMILY	PYP-like sensor domain (PAS domain)	32	132	IPR035965	-
	Gso1g0363	388	CDD	PAS	31	133	IPR000014	-
	Gso1g0363	388	CDD	PAS	257	345	IPR000014	-
	Gso1g0363	388	Gene3D	PAS domain	18	142	-	-
	Gso1g0363	388	Pfam	PAS domain	33	134	IPR000014	-
	Gso1g0363	388	Pfam	PAS domain	248	346	IPR000014	-
	Gso1g0363	388	PANTHER	PROTEIN TWIN LOV 1	12	382	-	-
	Gso1g0363	388	SMART	pas_2	235	308	IPR000014	-
	Gso1g0363	388	SMART	pas_2	22	91	IPR000014	-
	Gso1g0363	388	PANTHER	PROTEIN TWIN LOV 1	12	382	-	-
	Gso1g0363	388	ProSiteProfiles	PAS repeat profile.	260	282	IPR000014	-
	Gso1g0363	388	TIGRFAM	sensory_box: PAS domain S-box protein	46	128	IPR000014	-
	Gso1g0363	388	TIGRFAM	sensory_box: PAS domain S-box protein	260	345	IPR000014	-
	Gso1g0363	388	SMART	pac_2	97	140	IPR001610	-
	Gso1g0363	388	SMART	pac_2	310	352	IPR001610	-
	Gso1g0363	388	ProSiteProfiles	PAC domain profile.	307	361	IPR000700	-
	Gso1g0363	388	ProSiteProfiles	PAS repeat profile.	20	68	IPR000014	-
	Gso1g0363	388	SUPERFAMILY	PYP-like sensor domain (PAS domain)	249	346	IPR035965	-
	Gso1g0363	388	Gene3D	PAS domain	247	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso1g0363	Gso-Chr1	4618698	4623580	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso1g0363	19	383	AGC Kinase Gene Family	AT5G58140	30.657	4.71e-61	209

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso1g0363	-		-	gmx:100785562	762.681