Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0361 ATGATATATTACTATTTTAGAGCAACACTCAGACAAGACCTTAGAAAAATCGAATTAAATTTGCACAGTAACATATTCCCTCACAACACAACAATGAGTCGCAAGAGAGACAGGTCAGCTTACTTTTCCCGCCACGACGCCGCCAAGCGCCGCCTCCCCTTGCCGGAGCCCGCGGAGGAGGAGACGCCTACGATGAGACCGGCGCCGCCGTCCGCGGTGGTCGTGATGGGCCTCCCCCAGGACTGCTCCGTCCTCGATCTCAAGTCCCGATTCGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGATACATCACCTACCGGACCAAGGACTCCGCCGACGCTGCCATCGCCGCCGGCCTCGACCCCACCTTCGGAATCACCGTTAACTCTAAAATGGTTCAGGTGTTGTGGGCAACGGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGCAGGAACAAAGGTTCTATGTCAAAGCTTGTGCGTGCTGAGGTACCTTTGAGCAAGCATGGAAGAGGTAACAGACTTGCTTCACCCATAGGGAATACCAAACTTAGCGAGGCTAGCTCAGGTAGCTCAGTTTTAGAAGTGTCTTTCAAGGGCAGAGAAATTGTTGCTTATGATGATATCCTCTGACTATGAAAATCTGTATTGTTAGAGGGTAGGGTGATGGAAGAACCAAAAAAAACAGAGAACGAAGATGACAAGGATGAATCAGAACAACGAGTGTGGAGTTGGGGTGCTGGAACCGAGGGTCAGTTAGGAACAAAAATTCTTCAGGATGAGCACTTTCCACAACTCCTTCATCAACCCTCTCTCTCCTCCATCTCTTCCCTTGCCTGTGGCGGCGCTCATGTCATTGCCTTGACCTCTGCTGGGAAGGTACTATCATGGGGTAGGGGCAATTCTGGCCAACTAGGCCATGGGTTGGTTGTGAGTAACTCTTTGTATCCCAAGGCTGTGACATCATTGGATGGCTACTTCATAACCCATGTCTCTGCTGGGTGGGGCCACTCTGGTTTTGTTTCAGATAATGGGTGTGTGTTCACTTGTGGGGATGGCTCCTTTGGTCAACTGGGGCATGGGGATCATGCCTCACACTGTTCTCCTGTCAAAGTGTCATGCTTTGTTGATCAGCATGTTGAGCAGGTGGCATGTGGCATGCGCCATTCCCTTGTCTTGTTAAAAGATTGTACAGGAAATCAAGTTTATGGATTTGGCTCTGGGAAGCGTGGTCAACTGGGTGTCAGCAACGATAGGGTCAAATCTGTTAATGTTCCTAAAGTTGTTAGTGGGTTTGAAGGTGTTGAAATCGCTGGAATTGCTGCTAATGGTGACCATAGTGCTGCAGTATCTGTTGATGGGCATGTTTACACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATGCTCGTGTTCCTCAGTGCTTAAACTCTTCATTGAATTTTACCAAAGTTGCTCTGGGGTGGAACCATGCTTTAGCTATGAGTGGTGAGGGGGAGGTTTGTATGCTAGGTGGAAATCACCTTGGAGTGCTTAGTGATCTTCAGAACATAAGCCCAGCTAAGCATTTACCTCTAGATTTAAGAGAAGTCAATTTGGAGAAAGTCCCTGGTCTTGATGGGACGAAAATTACTGATATTGCTACTGGAGCTGAGCATTCTGTCATTGTCACAGAGCATGGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGTCAACTTGGTTTAGGGGATACTCGCGACCGAATCAGTCCTGTTACAGTAAGTCTTGGTTATGATCTGAATGAAGCTGCATCAGTTATTGTTTTCTGTGGAAGTGGGTTCACGTTTGCTGTAACCATGCCCTAG 1869 0.4901 MIYYYFRATLRQDLRKIELNLHSNIFPHNTTMSRKRDRSAYFSRHDAAKRRLPLPEPAEEETPTMRPAPPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRTKDSADAAIAAGLDPTFGITVNSKMVQVLWATDPLAMWREGVGNSRNKGSMSKLVRAEVPLSKHGRGNRLASPIGNTKLSEASSGSSVLEVSFKGREIVAYDDIL*L*KSVLLEGRVMEEPKKTENEDDKDESEQRVWSWGAGTEGQLGTKILQDEHFPQLLHQPSLSSISSLACGGAHVIALTSAGKVLSWGRGNSGQLGHGLVVSNSLYPKAVTSLDGYFITHVSAGWGHSGFVSDNGCVFTCGDGSFGQLGHGDHASHCSPVKVSCFVDQHVEQVACGMRHSLVLLKDCTGNQVYGFGSGKRGQLGVSNDRVKSVNVPKVVSGFEGVEIAGIAANGDHSAAVSVDGHVYTWGRGFKGFEDARVPQCLNSSLNFTKVALGWNHALAMSGEGEVCMLGGNHLGVLSDLQNISPAKHLPLDLREVNLEKVPGLDGTKITDIATGAEHSVIVTEHGEIKTWGWGEHGQLGLGDTRDRISPVTVSLGYDLNEAASVIVFCGSGFTFAVTMP* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0361 620 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 246 297 IPR000408 -
Gso1g0361 620 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 460 503 IPR000408 -
Gso1g0361 620 Pfam Regulator of chromosome condensation (RCC1) repeat 407 456 IPR000408 -
Gso1g0361 620 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Gso1g0361 620 Pfam Regulator of chromosome condensation (RCC1) repeat 247 294 IPR000408 -
Gso1g0361 620 Pfam Regulator of chromosome condensation (RCC1) repeat 350 399 IPR000408 -
Gso1g0361 620 Pfam Regulator of chromosome condensation (RCC1) repeat 568 617 IPR000408 -
Gso1g0361 620 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Gso1g0361 620 PRINTS Chromosome condensation regulator RCC1 signature 561 582 IPR000408 -
Gso1g0361 620 PRINTS Chromosome condensation regulator RCC1 signature 247 263 IPR000408 -
Gso1g0361 620 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Gso1g0361 620 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Gso1g0361 620 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 350 IPR000408 -
Gso1g0361 620 Gene3D - 189 471 IPR009091 -
Gso1g0361 620 Gene3D - 472 619 IPR009091 -
Gso1g0361 620 SMART rrm1_1 72 142 IPR000504 GO:0003723
Gso1g0361 620 Gene3D - 28 148 IPR012677 -
Gso1g0361 620 SUPERFAMILY RNA-binding domain, RBD 60 155 IPR035979 GO:0003676
Gso1g0361 620 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 566 620 IPR000408 -
Gso1g0361 620 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 565 IPR000408 -
Gso1g0361 620 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 459 IPR000408 -
Gso1g0361 620 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Gso1g0361 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 123 IPR000504 GO:0003723
Gso1g0361 620 SUPERFAMILY RCC1/BLIP-II 405 618 IPR009091 -
Gso1g0361 620 SUPERFAMILY RCC1/BLIP-II 246 423 IPR009091 -
Gso1g0361 620 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 402 IPR000408 -
Gso1g0361 620 CDD RRM_SF 73 141 - -
Gso1g0361 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 146 IPR000504 GO:0003723
Gso1g0361 620 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 248 614 - -
Gso1g0361 620 PANTHER OS01G0777800 PROTEIN 248 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0361 Gso-Chr1 4492733 4499119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0361 32 218 Homeobox Transcription Factor Family AT1G27050 49.519 3.65e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0361 - - gmx:100793672 1236.48