Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0351 ATGGTTGCTGGTGACTACTACAGGATACTGAAGGTGAAGCATGATGCCACGGATGAAGAGTTGAAGAAGGCTTATAAAAAGTTGGCCATGAAATGGCACCCAGATAAGAACCTTGAAGACCCTCTTAGGAAAGAAGAGTTTGAGGCCAAGTTTAAACAAGTTTCTGAGGCCTATGATGTGCTAAGTGACCCCAAGAAGCGCCAGATCTATGACTTGTACGGTCACTATCCCCTTAACTCTCAACGCTTCACCAAGGAATATGGTGGTGGGAACATGAAGGATGCAGGGGTGGTTGAAAGCAGCTTGCTTTGTACCCTTGAAGAACTTTACAACGGTTGCAAAAAGAAGTTGAAGGTCTCAAGGATTGTTGCTCCTGATGAATTCGGAGAGTTGAAGTCTGTAGAAGAAATTTTGAAGATAGACATAAAACCTGGTTGGAAGAAGGGCACAAAAATCACTTTTCCTGGGAAAGGCAACCAAGAACCAGGATTTGCTCCAGCTGATCTAATATTTGTGTTGGATGAGAGTCCTCATGCTATTTTCAAGAGGGATGGAAATGATCTTGTGGCGATCCAGAAGATATTACTTGTAGATGCTCTCATAGGAAAGACTCTCAACTTGGCTACCTTGGATGGAAGAGATCTCACAATCCAAATGGCTGATATTGTGAAACCTGGCTATGAGCTGGTGATCTTAAATGAAGGCATGCCAATCTCAAAGGAACCTGGCAAGAAAGGAAACCTCAGAATCATGTTTGATGTTATTTTTCCATCAAGGCTGACCACACAACAGAAGTGTGATCTGAGAAGGATTCTCAGTGATGTTTATTACTAA 834 0.4257 MVAGDYYRILKVKHDATDEELKKAYKKLAMKWHPDKNLEDPLRKEEFEAKFKQVSEAYDVLSDPKKRQIYDLYGHYPLNSQRFTKEYGGGNMKDAGVVESSLLCTLEELYNGCKKKLKVSRIVAPDEFGELKSVEEILKIDIKPGWKKGTKITFPGKGNQEPGFAPADLIFVLDESPHAIFKRDGNDLVAIQKILLVDALIGKTLNLATLDGRDLTIQMADIVKPGYELVILNEGMPISKEPGKKGNLRIMFDVIFPSRLTTQQKCDLRRILSDVYY* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0351 277 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gso1g0351 277 SMART dnaj_3 4 66 IPR001623 -
Gso1g0351 277 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 4 274 - -
Gso1g0351 277 Gene3D DnaJ domain 2 91 IPR036869 -
Gso1g0351 277 CDD DnaJ 5 63 IPR001623 -
Gso1g0351 277 Gene3D - 178 258 - -
Gso1g0351 277 PRINTS DnaJ domain signature 7 25 IPR001623 -
Gso1g0351 277 PRINTS DnaJ domain signature 25 40 IPR001623 -
Gso1g0351 277 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gso1g0351 277 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gso1g0351 277 SUPERFAMILY Chaperone J-domain 5 92 IPR036869 -
Gso1g0351 277 Pfam DnaJ C terminal domain 99 257 IPR002939 -
Gso1g0351 277 SUPERFAMILY HSP40/DnaJ peptide-binding domain 101 178 IPR008971 GO:0006457|GO:0051082
Gso1g0351 277 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Gso1g0351 277 CDD DnaJ_C 98 260 - -
Gso1g0351 277 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 4 274 - -
Gso1g0351 277 Gene3D - 96 176 - -
Gso1g0351 277 Pfam DnaJ domain 5 71 IPR001623 -
Gso1g0351 277 SUPERFAMILY HSP40/DnaJ peptide-binding domain 181 265 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0351 Gso-Chr1 4392091 4394593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0351 6 73 C2H2 Transcription Factor Family AT1G74250 36.232 6.33e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0351 K09510 - gmx:100814971 560.066