Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0338 ATGGATCCGGCGGCGATGATGAACGGCGGCGCCAACGCGACGTCGTATCACCTGTCAGAGATCTGGCAGTTCCCGCCTCCCAACGCGCCAGACGAGCTGGGACTCAGAAGGCCCCACTTCACCCACGGCTTCGCGGACTTCGCCCCGGATCCGACCCGAGACGCCGTCCCGGGTCGCGACCCGGCCAGCATTGCCCAGAAGAAGCGCCGCGACGCCTCGGCCGAGGAGGAGGAATCCGCTAAGGGCGCCTCCACCACCAATGCCGTGAATGAGGGGGGTGGTGTTGGTGATGGGAAACGGGTCAAGACGAGTGAGAGTGGGAAAGGTGAAGGAGAAACCAGTTCAGGAAAGCTTGCGGAGCAAAGTGGTAAGCCACCTTCGGAGCCTCCAAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGACGCGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATATAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGACTGGCCCCCAGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATGCCGTTTGCTTCCCAAGCTACAAGAGAGTATAGCCGAGGTTCATCGCCAGAATGGTTACATATGCAGGTTGGAGGTGGTTATGAAAGAGCAACGTAG 795 0.5321 MDPAAMMNGGANATSYHLSEIWQFPPPNAPDELGLRRPHFTHGFADFAPDPTRDAVPGRDPASIAQKKRRDASAEEEESAKGASTTNAVNEGGGVGDGKRVKTSESGKGEGETSSGKLAEQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLAPRIEVFPPKDFDQQTFDTTGMPFASQATREYSRGSSPEWLHMQVGGGYERAT* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0338 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 211 IPR036638 GO:0046983
Gso1g0338 264 Coils Coil 190 210 - -
Gso1g0338 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 193 IPR011598 GO:0046983
Gso1g0338 264 SMART finulus 149 199 IPR011598 GO:0046983
Gso1g0338 264 Gene3D - 140 216 IPR036638 GO:0046983
Gso1g0338 264 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 264 IPR024097 GO:0006355
Gso1g0338 264 PANTHER BNAC05G07950D PROTEIN 1 264 - -
Gso1g0338 264 MobiDBLite consensus disorder prediction 63 78 - -
Gso1g0338 264 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983
Gso1g0338 264 MobiDBLite consensus disorder prediction 25 132 - -
Gso1g0338 264 CDD bHLH_AtBPE_like 133 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0338 Gso-Chr1 4241191 4245041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0338 1 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 54.936 5.20e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0338 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0338 - - gmx:100794893 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0338 1 4241191 4245041 Gso2g0215 2 2260843 2264349 GST
Gso1g0338 1 4241191 4245041 Gso17g0127 17 1176670 1178209 PCT
Gso17g0127 17 1176670 1178209 Gso1g0338 1 4241191 4245041 PCT