Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0336 ATGATGCCGGAAAGTGACATCACTCTATCCTCTTTCAGGCTTCGTTGGGACGTGTTCCTGAGCTTCAGGGGCACCGACACGCGGGACACTTTCACCATGAGCCTCTACCACGCTCTCCACCGCCGCGGCCTCCGCGTCTTCCGCGACGACGACGGGCTGGAGCGCGGCGACGAGATCCAGAAGAAGCTTCTGGAAGCCATTGAAGACTCCGCCGCCGCCGTCGTCGTTCTCTCTCCCGATTACGCGTCTTCCCATTGGTGCCTCGACGAACTTGCCAAGATTTGCAAGTGTGGGAGGCTGATCCTTCCGGTTTTCTACTGGGTCGACCCTTCCCATGTCAGAAAGCAAAAGGGTCCCTTTGAGGATTCTTTCGGGTCCCATGCAAACAAGTTTCCTGAAGAGAGTGTTCAGCAGTGGAGGGATGCCATGAAAAAAGTGGGTGGAATCGCTGGTTATGTTTTGGATGAGAAATGTGATAGTGAAAAGAGTGATAAGCTCATTCAGCATTTGGTGCAAATACTTTTGAAGCAGATGAGGAATACACCATTGAATGTGGCTCCTTACACAGTTGGGCTGGACGATAGAGTTGAAGAGTTGAAAAAGCTGTTAGATGTGAAATCCAACGATGTAAGGGTTTTGGGGTTGTATGGAATGGGAGGGGTTGGTAAGACAACCCTAGCCAAGAGCCTCTTCAACAGCCTTGTTGTTCACAATTTTGAGCGACGCAGTTTCATTACAAATATTAGATCACAAGTCTCCAAACATGATGGTTTGGTTTCTCTTCAAAACACAATTCATGGTGATCTTTCTGGTGGGAAAAAGGATCCAATCAACGATGTCAATGATGGTATTTCTGCTATCAAAAGAATAGTACAAGAGAATCGAGTTTTGTTGATCTTAGATGATGTTGATGAAGTAGAGCAGCTTAAATTTTTGATGGGTGAGAGGGAATGGTTTTACAAAGGAAGCCGTGTTGTAATAACCACAAGGGATAGAGAAGTTTTAACTAAGGCTAAGAGTTATGTTGATAAACATTATGAGGTGAAGGAATTGGAATTCTCTCCATCAATGGAATTGTTTTGTTACCATGCAATGAGAAGAAAGGAACCTGCAGAGGGTTTTTTGGACCTTGCAAAGCAAATTGTGGAGAAGACGGGAGGGTTGCCCTTGGCTTTGGAAGTTTTTGGCTCTTTTCTGTTTGACAAGAGGACGATGAGGGAATGGAAAGATGCTGTGGAGAAGATGAAACAGATTAGTCCTTCTGGTATTCATGATGTGCTGAAAATCAGTTTTGATGCGTTGGATGAACAAGAGAAATGTATATTCCTTGACATTGCTTGTTTGTTTGTGCAAATGGAAATGAAGAGGGAGGATGTGGTTGATATATTGAATGGGTGTAATTTTAGAGGAGATATAGCACTGACTGTACTCACTGCAAGATGTCTAATTAAAATCACTGGTGATGGTAAACTGTGGATGCATGATCAAGTTAGAGACATGGGAAGGCAAATTGTGCATAGTGAAAACCTTGCAGACCCTGGTCTACGTAGCAGGCTCTGGGATCGTGATGAAATCTTGATTGTCTTAAAGAGTATGAAGGGAACAAGAAATGTTCAAGGGATAGTCGTAGATTGTGTTAAGAGAAGAATGTCCACTCCTAGAGATCGCTCTGCTGATGAAATTACTTGGGAAAATTTTCGACGTAAGCCTAGTTGTAAATTGGCATTAGAATATATTAAAGAGAAGTATAAAAAGTATGTGCGGGATAGAGAAGAGAAAGCAAAAGAGGTTGTACTTCAGGCTAAGAACTTTGAATCAATGGTTTCCTTAAGATTGCTTCAAATTAATTATTCGAGATTGGAAGGACAATTCAGATGCCTTCCCGCAGGACTGAAATGGCTACAATGGAAACAATGTCCATTAAGGTATATGCCTTCTAGCTATAGTCCTTTGGAACTTGCTGTCATGGATCTCTCGGAAAGTAACATTGAAACTCTGTGGGGCAGAAGCAATAACAAGGTGGCTGAGCACTTGATGGTTTTAAACCTCTCCAATTGCCACCGTTTGACAGCAACTCCTGATTTAACTGGGTATCTCTCTCTTAAAAAAATTGTTTTGGAAGAATGCTCTCATTTAATTAGGATTCATGAATCACTTGGAAATCTAAGTTCCTTAGTTCACTTAAACTTGCGTTTCTGCTATAACCTTGTCGAACTACCTAGTGATGTCTCTGGGATGAAACATCTCGAGGACCTTATTCTTTCCGACTGCTGGAAATTGAAAGCATTACCAAAAGACTTAAGTTGCATGATTTGTTTAAGACAACTTCTTATTGATAACACTGCTGTAACTGAGCTTCCTGAGTCCATCTTCCACCTCACAAAACTTGAAAATCTGAGTGCAAATGGATGCAACTCTCTGAAGAGGTTACCTACCTGCATTGGGAAACTCTGCTCCCTGCAAGAATTGTCACTCAATCATACAGCATTAGAGGAATTGCCATATTCTGTTGGTTCTTTGGAAAAACTAGAGAAGCTTAGTTTGGTGGGGTGCAAGTCACTGTCAGTGATTCCTAACTCTATTGGGAACCTAATTTCATTGGCTCAATTATTTTTTGACATAAGTGGAATTAAAGAATTGCCTGCTTCTATTGGTTCTTTATCATATTTAAGGAAACTGTCTGTGGGAGGCTGCACTTCTCTTGACAAATTGCCTGTGTCAATAGAAGCATTAGTTTCTATTGTTGAACTTCAGTTAGATGGGACAAAAATTACCACTTTGCCAGATCAAATTGGTGCCATGCAAATGTTAGAGAAGCTTGAGATGAAAAATTGTGAGAATCTGAGGTTTCTACCAGTATCATTTGGCTGTCTGTCAGCTCTTACCAGTTTGGACTTGCATGAGACAAATATTACTGAATTGCCAGAATCAATAGGAATGTTGGAAAATCTTATTCGGTTGAGGTTAGACATGTGCAAACAGCTCCAAAGGCTTCCAGATTCCTTTGGAAATTTGAAATCTTTGCAATGGTTACAGATGAAGGAAACAACACTTACTCATCTACCTGATAGCTTTGGGATGCTCACAAGCCTGGTAAAACTAGACATGGAAAGAAGGCTCTATCTTAATGGGGCTACTGGGGCCATAATTCCTAACAAACAAGAACCTAATTCAAAGGCAATATTAAGATCTTTTTGCAACCTAACCTTGCTGGAAGAGTTAAATGCTCATGGATGGGGAATGTGTGGAAAAATTCCAGATGACTTTGAAAAGCTATCATCACTAGAAACTTTAAGTTTAGGCCACAACAATATTTTCAGTCTTCCAGCCAGCATGATAGGACTATCCTATCTCAAAAAGCTTTTATTGTCAGATTGCAGGGAGCTCATTTTTCTGCCTCCTCTTCCATCTAGCCTTGAAGAACTTAATCTTGCGAACTGTATTGCAGTACAGTACATGCATGATATTTCAAACTTGAAGCTCTTAGAGGAGTTGAACCTTACAAATTGTGAAAAGGTGGTGGATATACCAGGCCTTGAACACTTGAAGTCCTTAAGGAGGTTGTACATGAATGGTTGCATTGGATGCTCCCATGCTGTCAAGAGAAGATTTACCAAGGTTCTACTTAAAAAATTGGAGATTTTGATTATGCCTGGAAGCAGAGTCCCGGACTGGTTTACAGCAGAACCAGTTGTCTTTTCCAAGCAAAGAAACCGTGAGCTTAAGGGTATTATTTGTTCTGGTGTTCTCTCTTTCAATAATATACCTGAAAACCAAAGAGAAGGACTGCAGTTAGAGGATGTTCAAGGAAAAATCTTCAATTTGACTGATAAAGTGTTTAGCACAACGTTTCGCCTTCTAGGAGTACCTAGGACAAATAAAGACCACATATTTTTGCGCAGATTTGGAGTTAATTCTTCGTTAGTTTTTCAGTTACAAGATAAATATACCTTACATTTGAAAAAGAGAGACCCTCCTCTTATTGAGAGGCTGGAGCTGAAGAACTGCAGAATTCTTTTAGTTTTTGAAGGCGATGATGATTACGTGGGAGACGAAGGATCACTAGATGAAAGCCAATACTCTGTTTCACAAAAATTAGCCAAGTTCTTCAACTTTGCTGCAAATGACCCATGTGTGTGA 4140 0.4097 MMPESDITLSSFRLRWDVFLSFRGTDTRDTFTMSLYHALHRRGLRVFRDDDGLERGDEIQKKLLEAIEDSAAAVVVLSPDYASSHWCLDELAKICKCGRLILPVFYWVDPSHVRKQKGPFEDSFGSHANKFPEESVQQWRDAMKKVGGIAGYVLDEKCDSEKSDKLIQHLVQILLKQMRNTPLNVAPYTVGLDDRVEELKKLLDVKSNDVRVLGLYGMGGVGKTTLAKSLFNSLVVHNFERRSFITNIRSQVSKHDGLVSLQNTIHGDLSGGKKDPINDVNDGISAIKRIVQENRVLLILDDVDEVEQLKFLMGEREWFYKGSRVVITTRDREVLTKAKSYVDKHYEVKELEFSPSMELFCYHAMRRKEPAEGFLDLAKQIVEKTGGLPLALEVFGSFLFDKRTMREWKDAVEKMKQISPSGIHDVLKISFDALDEQEKCIFLDIACLFVQMEMKREDVVDILNGCNFRGDIALTVLTARCLIKITGDGKLWMHDQVRDMGRQIVHSENLADPGLRSRLWDRDEILIVLKSMKGTRNVQGIVVDCVKRRMSTPRDRSADEITWENFRRKPSCKLALEYIKEKYKKYVRDREEKAKEVVLQAKNFESMVSLRLLQINYSRLEGQFRCLPAGLKWLQWKQCPLRYMPSSYSPLELAVMDLSESNIETLWGRSNNKVAEHLMVLNLSNCHRLTATPDLTGYLSLKKIVLEECSHLIRIHESLGNLSSLVHLNLRFCYNLVELPSDVSGMKHLEDLILSDCWKLKALPKDLSCMICLRQLLIDNTAVTELPESIFHLTKLENLSANGCNSLKRLPTCIGKLCSLQELSLNHTALEELPYSVGSLEKLEKLSLVGCKSLSVIPNSIGNLISLAQLFFDISGIKELPASIGSLSYLRKLSVGGCTSLDKLPVSIEALVSIVELQLDGTKITTLPDQIGAMQMLEKLEMKNCENLRFLPVSFGCLSALTSLDLHETNITELPESIGMLENLIRLRLDMCKQLQRLPDSFGNLKSLQWLQMKETTLTHLPDSFGMLTSLVKLDMERRLYLNGATGAIIPNKQEPNSKAILRSFCNLTLLEELNAHGWGMCGKIPDDFEKLSSLETLSLGHNNIFSLPASMIGLSYLKKLLLSDCRELIFLPPLPSSLEELNLANCIAVQYMHDISNLKLLEELNLTNCEKVVDIPGLEHLKSLRRLYMNGCIGCSHAVKRRFTKVLLKKLEILIMPGSRVPDWFTAEPVVFSKQRNRELKGIICSGVLSFNNIPENQREGLQLEDVQGKIFNLTDKVFSTTFRLLGVPRTNKDHIFLRRFGVNSSLVFQLQDKYTLHLKKRDPPLIERLELKNCRILLVFEGDDDYVGDEGSLDESQYSVSQKLAKFFNFAANDPCV* 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0336 1379 ProSiteProfiles Leucine-rich repeat profile. 1094 1116 IPR001611 GO:0005515
Gso1g0336 1379 SMART LRR_typ_2 911 934 IPR003591 -
Gso1g0336 1379 SMART LRR_typ_2 770 793 IPR003591 -
Gso1g0336 1379 SMART LRR_typ_2 1092 1115 IPR003591 -
Gso1g0336 1379 SMART LRR_typ_2 722 746 IPR003591 -
Gso1g0336 1379 SMART LRR_typ_2 1005 1027 IPR003591 -
Gso1g0336 1379 SMART LRR_typ_2 958 981 IPR003591 -
Gso1g0336 1379 SMART LRR_typ_2 817 840 IPR003591 -
Gso1g0336 1379 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 152 IPR035897 -
Gso1g0336 1379 Pfam NB-ARC domain 194 417 IPR002182 GO:0043531
Gso1g0336 1379 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 1332 IPR044974 GO:0006952
Gso1g0336 1379 SUPERFAMILY L domain-like 903 1221 - -
Gso1g0336 1379 Pfam TIR domain 16 178 IPR000157 GO:0007165
Gso1g0336 1379 SMART till_3 15 149 IPR000157 GO:0007165
Gso1g0336 1379 ProSiteProfiles TIR domain profile. 14 170 IPR000157 GO:0007165
Gso1g0336 1379 Gene3D Ribonuclease Inhibitor 590 872 IPR032675 -
Gso1g0336 1379 SUPERFAMILY L domain-like 492 945 - -
Gso1g0336 1379 PANTHER TMV RESISTANCE PROTEIN N-LIKE 13 1332 - -
Gso1g0336 1379 Gene3D - 175 344 IPR027417 -
Gso1g0336 1379 PRINTS Disease resistance protein signature 212 227 - -
Gso1g0336 1379 PRINTS Disease resistance protein signature 290 304 - -
Gso1g0336 1379 PRINTS Disease resistance protein signature 385 399 - -
Gso1g0336 1379 PRINTS Disease resistance protein signature 838 854 - -
Gso1g0336 1379 Gene3D - 13 174 IPR035897 -
Gso1g0336 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 445 IPR027417 -
Gso1g0336 1379 Gene3D Ribonuclease Inhibitor 1056 1274 IPR032675 -
Gso1g0336 1379 Gene3D - 351 435 IPR042197 -
Gso1g0336 1379 Gene3D Ribonuclease Inhibitor 873 1046 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0336 Gso-Chr1 4214198 4222657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0336 783 987 WRKY Transcription Factor Family AT4G12020 33.010 2.55e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0336 - - gmx:100784137 2722.19