Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0332 ATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCACGGACATGCACCGACGGTGGCGCCGCCGGGTCTCCGAGGGAGAACGGCATCATGCTGTTCGGCGTAAGAGTCATGACGGAAGCTAACTCCTCCTTCAGGAAGAGCGCCAGCATGAACAACCTCTCACAGTACGACGCGGAGTTCAACGCCGCCGACGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCCGGCCGCACGCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCATAGATTGTTCCTGTTAGGGTTACACAAAGTCGGAAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTGAAAACTCGCACGCCTACTCAGGTCGCTAGTCACGCTCAGAAGTACTTTCTCCGCCGCCACAACCAGAATCGCCGCCGCCGGAGATCTAGCCTCTTCGACATCACCACCGATACGGTGATGGAATCTTCTACTATAATGGAAGAAGAACAAGTTCCGCCAGAGACGGTGGCGGCGCCTCTCCCCGCCGCATATCCGCCGTCGCATTACGGGGCTTTTGCCGGCGCGGGTTTTCCGATAGCTCCGGTGGTGTTGCCGGTGAGTGGCGAGAGACTAACCAAGCCGATCAGGCCGACGCCGATTTTGCCAGTGCCTCCGTCTTCGAAGATGGCTAATTTGAACTTGAAAGAGAAAGCTTCTCCGACAAATCTCATTGAGCCTTTGCCGTTGTCGTTGAATCTGCCATCGCCGACGCCGCGGTCTCAGGATCAGTCGTCGGCGAGTAGTGGGCACTCGTCACCGTCGTCGTCGTCATCGGCGGCAGCTTTTCAGGCTATGTCTGCAGCGAAGTTCGGCAGCGGCGGGGATAGTATCATCAGCGTTGCTTGA 903 0.5803 MSRTCSQCGNNGHNSRTCTDGGAAGSPRENGIMLFGVRVMTEANSSFRKSASMNNLSQYDAEFNAADAGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVPPETVAAPLPAAYPPSHYGAFAGAGFPIAPVVLPVSGERLTKPIRPTPILPVPPSSKMANLNLKEKASPTNLIEPLPLSLNLPSPTPRSQDQSSASSGHSSPSSSSSAAAFQAMSAAKFGSGGDSIISVA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0332 300 PANTHER TRANSCRIPTION FACTOR KUA1 4 297 - -
Gso1g0332 300 MobiDBLite consensus disorder prediction 238 277 - -
Gso1g0332 300 MobiDBLite consensus disorder prediction 1 25 - -
Gso1g0332 300 Gene3D - 89 140 - -
Gso1g0332 300 ProSiteProfiles SANT domain profile. 86 139 IPR017884 -
Gso1g0332 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 139 IPR017930 -
Gso1g0332 300 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Gso1g0332 300 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 4 297 - -
Gso1g0332 300 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Gso1g0332 300 SUPERFAMILY Homeodomain-like 85 138 IPR009057 -
Gso1g0332 300 CDD SANT 90 135 IPR001005 -
Gso1g0332 300 Pfam Myb-like DNA-binding domain 90 135 IPR001005 -
Gso1g0332 300 SMART sant 87 137 IPR001005 -
Gso1g0332 300 MobiDBLite consensus disorder prediction 1 21 - -
Gso1g0332 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 137 IPR006447 GO:0003677
Gso1g0332 300 MobiDBLite consensus disorder prediction 253 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0332 Gso-Chr1 4138215 4140590 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso1g0332 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0332 - - gmx:780554 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0332 1 4138215 4140590 Gso2g0221 2 2326540 2328863 GST
Gso1g0332 1 4138215 4140590 Gso18g1046 18 17732634 17735714 PCT
Gso18g1046 18 17732634 17735714 Gso1g0332 1 4138215 4140590 PCT