Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0329 ATGAAGAGGTCCAGAGATGAAGTTCTCACGAGTTGTTCTCAATTGAAACGGCCTGTGTTGTCTTCACGAGGAGAAGCGTCTGGGCAACCGCAGATGATGAATGGAGGTGCTCAGAAACTGACAACTAATGATGCCCTTGCATATCTCAAGGCAGTGAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACTGTGGGTGTCATTGCAAGAGTGAAGGAACTGTTTAAAGGCCACAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGTTACGAAATCACACTTCCATCAGAGGATGATCAACCTGCCCCAAAGAAACCCGTTGAATTTGAAGAGGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGATGATCATGTGTATAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAGACAAATCTATTACTGAGGTCTACCAGGAGGTTGCTGCTATTTTTCAGGACCACCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGGAATTCTATGCTTCGCGATAGGAGCTCTGCAATGCCAACAATACGACAATTGCACGTTGAAAAGCGAGAACGGACCATTGTTTCACATGGTGATCATGACCCCAGTGTTGATCGTCCTGACCCAGATCATGACAGGGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGTGGAGAAGGAAAAGGAACGTAGAGAAGATAGAGACAAGAGAGAACGTGAAAGGGATGATAGAGATTATGAGCATGATGGGGCTCGAGATAGGGAGCGATTCTCTCACAAACGGAATCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGGTGTGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGTGAAAAGGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTGCATATCTACAGCAGGGAAATAATTACCCGACATGAGTTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTTCAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATAAAGGTTGAAGACAAGGATAGAGATCAGGATAGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGACAAATCTACTGCGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGAGAAGTATTTATCCAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGCACTCCTAGTTACCGTCTCTTACCGAAAAATTACCCAATACCTGTAGCTAGCCAGAAAACAGAACTTGGTGCTGAGGTGTTGAATGATTACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAGTAATATAATTAAAGGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAACCTGAGGTGTATTGAGCGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGGTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACTAAAAGCTTGAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATCAGTGAAAAGAAACGCAAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGGCGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCCAGATATTCATGAAGATTTATATCAGCTCATAAAATATTCCTGTGGAGAAATTTGCACAACTGAACACGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTATTCCTTCTCGGCCCCAGTGTGCAGAGGATACAGAAGATGTTGTCAAGGTTAAGAATAATTGTGTCCTAAATGACACAGCAACTGTTGCTGAGAGTGACTGTAGCCCTGTTGTGGGTGCTACCATAATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAACTTCTAGTAAAGCATGGCAGTCAAATGGTGATAGTGGGGTTGAGGATAGGTATCTTGATGACCATGCATTGCGTAAAACTGAAACTTTGGGCAGCAATACACAGCATGGTAAAATGAATAGTATTGCATTCACACCTGATGAACCATCAGGATTTAACAATAAGCAAGACCAGTCCAGCGAACGGTTAGTGAATGCAAATGTCTCACCAGCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACATAGATAATTTGTCGGGACTCACTGCCACTCCAACAAGACCTGGTAATGCTTCTGTTGAGGGAGGACTTGATATACCGTCATCAGAGGGTGGTGATTCTACAAGACTGGGTACATCAACAAATGGGGCCATCACTGGAGGCACCAAAGTTCACCGATACCAAGAGGAATCAGTTCGACCCTTCAAAAATGAAAGAGAAGAGGTGCATAAAGGAAAAGATGGTGGTGTGAGTCGGCAATACCAAAATAGGCACGGGGAAGAAGTTTGTGGTGAAACTAGAGGAGAAAACGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCATCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCACGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCCCATGATGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTACTAACTGTGAAGCCTCTAGCAAAGCATGTTCCTCCAATGTTACATGAGAAGGACAGGAATTCACGAGTTTTCTATGGAAATGATTCCTTTTATGTGTTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATAAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCAAGTGATACAAGCTCCACTGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAATCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAATAAGCTTTTACAACTATATGCATATGAGAAATCGAGAAAACCCGGAAAATTTGTTGACATCGTTTATCACGAAAATGCCCGTGTTCTTCTCCATGACGAGAACATATATCGTATTGAATATTCACCTGGACCAATGAAACTGTCTATTCAACTGATGGACTCTGGACATGATAAACCTGAGGTGACTGCTGTGTCAATGGACCCTAATTTTTCAACCTATCTACACTATGACTTCCTGTCTGTCGTCTCTGACAAAAAACAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGTAGATATGCCAGTAATGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTCTCATATGTTTTAGATACCGAAGACTTTTTGTTTCGGATAAGAAGGAAAAGAAGAGCCTTGCGTCTGAAGAGTTCAGGTGCTCACGAACAGGCACAGTCTTCAAACATTTGTTCAAGCAGAGTACAACGATTCCGCAATTTGTTTTCCATTACATGA 4218 0.409 MKRSRDEVLTSCSQLKRPVLSSRGEASGQPQMMNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDDQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKEDKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSMLRDRSSAMPTIRQLHVEKRERTIVSHGDHDPSVDRPDPDHDRGLLRIEKERRRVEKEKERREDRDKRERERDDRDYEHDGARDRERFSHKRNRKAEDSGAEPLLDADENFGVRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQIKVEDKDRDQDRDRDRYRDDGMKERDREFRERDKSTAIANKDVLGSKMSLYPSKEKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQKTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINSNIIKGDSPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWGEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKDDVLLAIAAGNRRPILPNLEFKYSDPDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCIPSRPQCAEDTEDVVKVKNNCVLNDTATVAESDCSPVVGATIMNPKHINVSRNGDECMPLDQSTSSKAWQSNGDSGVEDRYLDDHALRKTETLGSNTQHGKMNSIAFTPDEPSGFNNKQDQSSERLVNANVSPASGMEQSNGRTNIDNLSGLTATPTRPGNASVEGGLDIPSSEGGDSTRLGTSTNGAITGGTKVHRYQEESVRPFKNEREEVHKGKDGGVSRQYQNRHGEEVCGETRGENDADADDEGEESHHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVPPMLHEKDRNSRVFYGNDSFYVLLRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPGPMKLSIQLMDSGHDKPEVTAVSMDPNFSTYLHYDFLSVVSDKKQKSGIFLKRNKRRYASNDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLFRIRRKRRALRLKSSGAHEQAQSSNICSSRVQRFRNLFSIT* 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0329 1405 Gene3D Paired amphipathic helix 332 404 IPR036600 GO:0006355
Gso1g0329 1405 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Gso1g0329 1405 MobiDBLite consensus disorder prediction 1019 1033 - -
Gso1g0329 1405 PANTHER SIN3B-RELATED 14 437 IPR039774 GO:0003714
Gso1g0329 1405 PANTHER SIN3B-RELATED 470 1375 IPR039774 GO:0003714
Gso1g0329 1405 SMART hdac_interact2seq4b 498 598 IPR013194 -
Gso1g0329 1405 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Gso1g0329 1405 Coils Coil 253 276 - -
Gso1g0329 1405 MobiDBLite consensus disorder prediction 947 963 - -
Gso1g0329 1405 MobiDBLite consensus disorder prediction 1046 1071 - -
Gso1g0329 1405 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Gso1g0329 1405 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Gso1g0329 1405 MobiDBLite consensus disorder prediction 232 315 - -
Gso1g0329 1405 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Gso1g0329 1405 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Gso1g0329 1405 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Gso1g0329 1405 MobiDBLite consensus disorder prediction 232 310 - -
Gso1g0329 1405 Pfam C-terminal domain of Sin3a protein 1118 1364 IPR031693 -
Gso1g0329 1405 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Gso1g0329 1405 SUPERFAMILY PAH2 domain 332 400 IPR036600 GO:0006355
Gso1g0329 1405 MobiDBLite consensus disorder prediction 433 461 - -
Gso1g0329 1405 Pfam Sin3 family co-repressor 501 591 IPR013194 -
Gso1g0329 1405 MobiDBLite consensus disorder prediction 904 1071 - -
Gso1g0329 1405 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Gso1g0329 1405 MobiDBLite consensus disorder prediction 904 931 - -
Gso1g0329 1405 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Gso1g0329 1405 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 14 437 - -
Gso1g0329 1405 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 470 1375 - -
Gso1g0329 1405 MobiDBLite consensus disorder prediction 968 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0329 Gso-Chr1 4054316 4066655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0329 29 143 WRKY Transcription Factor Family AT4G12020 50.427 2.14e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso1g0329 Sin3a_C 3.9e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0329 K11644 - gmx:100811928 2542.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0329 1 4054316 4066655 Gso2g0225 2 2374272 2386644 GST
Gso1g0329 1 4054316 4066655 Gso18g1060 18 18130992 18142519 PCT
Gso18g1060 18 18130992 18142519 Gso1g0329 1 4054316 4066655 PCT