Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0313 ATGCCGGGGCACCGCTCGAAATCGGAGAAGCATGGCGGCGGCGGCGAGAAGCCGCTCCGGCGGGACCCCTACGAGGTCCTCGGCATCTCGCGCAACTCCACGGATCAGGAAATCAAAACCGCCTACCGCAAAATGGCGCTCAAATATCATCCGGACAAGAATGCAAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGCTACCTTCTCTTATAATATCCTGTCAGATCCTGATAAACGGCGTCAGTACGACTCAGCTGGCTTTGAGGCTGTTGAATCAGACAACCAAGAGTTGGAGTTAGATCTTTCAAGTTTAGGTGCTGTCAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTTCCAATTAAGACAACTGTATCTGCAACTGTTTTGGAAGAGGCACTCAATGGTTTAGTGACCATTCGACCACTTCCATTGGGACATAATATAGCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACAAGCTGGTTTTGTTTGTCGAGTACAATCGCCAGACAAAAGCAAGTTCAAGTTATTGTATTTCGATCAGGAAGACAACAGTGGTTTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACAGGGAAGGTTACCTCTGCTGGGATGTATTTTCTTGGGTTTCCTGTTTATCGATTAGATCAAACAATGAACTCTATAGCTGCTGCTAAGGATCCAGATACGTCATTTTTCAGAAAGCTGGATGCGTTTCAGCCCTGTGAATTAACAGAATTGAAGGCTGGTACCCATGTATTTGCTGTTTATGGTGACAACTTTTTCAAAAGTGCAAACTATACAATAGAAGCCCTGTGTGCTGCACCTTTTAGTGAAGAAAAAGAAAATTTAAGAAACATAGAAGCTCAAATTTTGTCTAAAAGGGCAGAAATATCAAAGTTTGAGGCAGAATATCGAGAGGTTCTGGCACAATTCTCAGATATGACAAACAGATATGCACATGAAATGCAAGCAATTGATGAGCTACTGAAGAATAGAAATGAAATACAGGCATCATACACCAGTGCTCCTTTAAAACGGACTACAAGTAGGAGCAGAAGTAAAAATTCTGCCAAGGAGGCAAAAGAAGATGGCCAAGCAAAGGAAAAGAGGAGTACAAGAGAACGGCCAAAGAAGAAGAAATGGTATAACCTCCACTTAAGAGTTGATAAGAGAAAGGCTTGCTAA 1233 0.4234 MPGHRSKSEKHGGGGEKPLRRDPYEVLGISRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEATFSYNILSDPDKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVTIRPLPLGHNIAKRVEKQCAHFYSVTITEEEAQAGFVCRVQSPDKSKFKLLYFDQEDNSGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFRKLDAFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEAQILSKRAEISKFEAEYREVLAQFSDMTNRYAHEMQAIDELLKNRNEIQASYTSAPLKRTTSRSRSKNSAKEAKEDGQAKEKRSTRERPKKKKWYNLHLRVDKRKAC* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0313 410 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 409 - -
Gso1g0313 410 CDD DnaJ 22 76 IPR001623 -
Gso1g0313 410 Gene3D DnaJ domain 14 105 IPR036869 -
Gso1g0313 410 MobiDBLite consensus disorder prediction 1 24 - -
Gso1g0313 410 Pfam DnaJ domain 22 84 IPR001623 -
Gso1g0313 410 SMART dnaj_3 21 79 IPR001623 -
Gso1g0313 410 Coils Coil 292 319 - -
Gso1g0313 410 MobiDBLite consensus disorder prediction 355 398 - -
Gso1g0313 410 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 409 - -
Gso1g0313 410 SUPERFAMILY Chaperone J-domain 21 91 IPR036869 -
Gso1g0313 410 ProSitePatterns Nt-dnaJ domain signature. 64 83 IPR018253 -
Gso1g0313 410 PRINTS DnaJ domain signature 24 42 IPR001623 -
Gso1g0313 410 PRINTS DnaJ domain signature 42 57 IPR001623 -
Gso1g0313 410 PRINTS DnaJ domain signature 59 79 IPR001623 -
Gso1g0313 410 PRINTS DnaJ domain signature 79 98 IPR001623 -
Gso1g0313 410 ProSiteProfiles dnaJ domain profile. 22 87 IPR001623 -
Gso1g0313 410 MobiDBLite consensus disorder prediction 368 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0313 Gso-Chr1 3833127 3837622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0313 20 85 C2H2 Transcription Factor Family AT1G74250 43.662 6.64e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0313 - - gmx:100791554 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0313 1 3833127 3837622 Gso2g0246 2 2653884 2658648 GST