Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0309 ATGAAGGAAGCGACCTGTATCTTTCATCAACAGCTACACTCTCTCTTTCTTCACTCTTCACCGCAACTCACACTTCCGGCGAAACCTCCCCGGAAGCCATGGCCAGAGAATGAGTCTCCGCCGATTGCCATGTCGGTCTCCTGCTCCAACTGCTTCCCCGACGACGACCACTCCTTCCTCCTCTGCGGCGAGGACTCCTCCGGAATCATGGATTCCTCGCCGGAGTGTTCCTCCGACCTCGATTCCTCGCCGCCGTCGGAGGCGGAGTCCATCGCCGGATTCATGGAAGACGAGCGCAACTTCGTCCCCGGATTCGAATACCTCAATAGGTTCCAATCTCGCTCTCTCGACGCCTCTGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTGCAGGCTTATTACGCTTTTCAACCGGTCACGGCTTATCTTTCCGTTAACTACTTGGATCGGTTCTTGAATTCTCGACCGTTGCCGCCGAAAACGAATGGGTGGCCACTGCAACTTCTCTCTGTTGCGTGCTTGTCTTTAGCAGCAAAGATGGAGGAATCTCTAGTTCCATCTCTTTTGGACCTTCAGGTAGAAGGTGCTAAATACGTATTTGAACCCAAAACAATTAGAAGAATGGAGCTACTTGTTCTGGGCGTGTTGGATTGGAGGCTAAGATCGGTTACCCCATTTAGCTTCCTCGATTTCTTTGCGTGCAAGTTAGATTCAACTGGGACTTTTACCGGGTTCCTCATTTCACGTGCTACACAAATTATCTTATCTAATATACAAGAGGCTAGCTTTCTTGCGTATTGGCCATCATGCATTGCTGCAGCAGCCATTCTCCATGCAGCAAATGAAATTCCTAATTGGTCTCTCGTTAGGCCTGAGCATGCAGAGTCATGGTGTGAGGGGTTAAGAAAGGAGAAAATTATAGGGTGCTACCAATTAATGCAAGAACTTGTGATTGACAATAACCAGAGGAAACCCCCTAAGGTGTTACCACAGCTGCGAGTGACAATATCTCGGCCCATTATGAGGTCTAGTGTCTCATCCTTCTTAGCATCATCCTCTTCACCTTCATCATCCTCTTTGTCTTGTAGAAGGAGGAAATTAAATAACTCTTTGTGGGTAGACGATGACAAAGGAAACTCCCAATGA 1149 0.4848 MKEATCIFHQQLHSLFLHSSPQLTLPAKPPRKPWPENESPPIAMSVSCSNCFPDDDHSFLLCGEDSSGIMDSSPECSSDLDSSPPSEAESIAGFMEDERNFVPGFEYLNRFQSRSLDASAREESVAWILKVQAYYAFQPVTAYLSVNYLDRFLNSRPLPPKTNGWPLQLLSVACLSLAAKMEESLVPSLLDLQVEGAKYVFEPKTIRRMELLVLGVLDWRLRSVTPFSFLDFFACKLDSTGTFTGFLISRATQIILSNIQEASFLAYWPSCIAAAAILHAANEIPNWSLVRPEHAESWCEGLRKEKIIGCYQLMQELVIDNNQRKPPKVLPQLRVTISRPIMRSSVSSFLASSSSPSSSSLSCRRRKLNNSLWVDDDKGNSQ* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0309 382 Pfam Cyclin, C-terminal domain 224 330 IPR004367 -
Gso1g0309 382 SMART cyclin_7 126 215 IPR013763 -
Gso1g0309 382 Gene3D - 104 222 - -
Gso1g0309 382 Gene3D - 95 285 - -
Gso1g0309 382 SUPERFAMILY Cyclin-like 85 221 IPR036915 -
Gso1g0309 382 PANTHER CYCLINS 44 372 IPR039361 -
Gso1g0309 382 SUPERFAMILY Cyclin-like 206 324 IPR036915 -
Gso1g0309 382 SMART Cyclin_C_2 224 358 IPR004367 -
Gso1g0309 382 Pfam Cyclin, N-terminal domain 94 221 IPR006671 -
Gso1g0309 382 ProSitePatterns Cyclins signature. 121 152 IPR006671 -
Gso1g0309 382 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 44 372 - -
Gso1g0309 382 CDD CYCLIN 127 214 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0309 Gso-Chr1 3728584 3732485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0309 39 382 Core Cell Cycle Gene Families AT1G70210 61.032 3.57e-133 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0309 K18810 - gmx:100780369 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0309 1 3728584 3732485 Gso2g0251 2 2731239 2734845 GST
Gso1g0309 1 3728584 3732485 Gso18g1080 18 18905355 18910012 PCT
Gso18g1080 18 18905355 18910012 Gso1g0309 1 3728584 3732485 PCT