Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0298 ATGCCATTTGGTTTGGTCTCACTCTCAGCCTGGAACAAGCGTCGTAGAAGCAAATCACAAGATCATACAGATCCCTGGGTTTACAAACCTGCACAGCTTTGGCAACTTGAAGATCAAATGCCACGACCTACAAAAAGGCTACATGGATCATCTGTTTACACACTCAAGGAGATGGAGGAGGCAACATGTTCATTCAGTGATGAGAATCTGCTTGGTAAAGGAGGATTTGGCAAAGTCTACCGGGGAACTTTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGTTGCCAGCAATTAAAGCAGCAGAGGGGGAACGTGAGTTTCGTGTTGAAGTTGACATCTTGAGCAGACTTGACCACCCAAATCTTGTTTCTTTGATAGGCTACTGTGCGGATGGAAAGCATAGGTTCCTAGTATATGAATATATGCGTAGAGGGAACCTGCAAGATCATTTGAATGGAATTGGGGAAAGAAACATGGATTGGCCTCGAAGACTCCAAGTGGCACTGGGAGCTGCAAAAGGACTTGCTTATCTCCATTCAAGTTCTGATGTTGGAATTCCTATTGTTCATAGGGATTTCAAATCGACCAATATTCTCTTAGACGATAACTTTGAAGCAAAGATATCTGATTTTGGGCTTGCGAAGTTAATGCCAGAAGGACAGGAGACACATGTGACTGCCAGAGTACTTGGTACCTTTGGCTATTTTGATCCAGAGTATACATCGACAGGGAAACTCACTCTACAGAGTGATGTTTATGCTTTTGGTGTTGTTCTTTTGGAGCTTTTGACTGGACGTCGAGCTGTAGATCTAAACCAAGGTCCCAACGATCAAAACCTTGTACTACAGGTGAGGCACATACTGAATGACCGCAAGAAGCTTCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCTTACACCATTCAGTCTATAGTCATGTTTGCCAATCTGGCATCAAGATGTGTCCGTACTGAGAGTAATGAAAGACCTTCAATGGCAGAATGTATAAAAGAACTCCTAATGATTATCTATACAAATTCGAAAGGCTTGGGAATGGTTATGCATAGTTTGAGAATGATCTAG 1092 0.4286 MPFGLVSLSAWNKRRRSKSQDHTDPWVYKPAQLWQLEDQMPRPTKRLHGSSVYTLKEMEEATCSFSDENLLGKGGFGKVYRGTLRSGEVVAIKKMELPAIKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMRRGNLQDHLNGIGERNMDWPRRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLDDNFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPEMARNSYTIQSIVMFANLASRCVRTESNERPSMAECIKELLMIIYTNSKGLGMVMHSLRMI* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0298 363 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Gso1g0298 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Gso1g0298 363 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
Gso1g0298 363 CDD STKc_IRAK 71 342 - -
Gso1g0298 363 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 363 - -
Gso1g0298 363 Gene3D Phosphorylase Kinase; domain 1 35 143 - -
Gso1g0298 363 ProSiteProfiles Protein kinase domain profile. 65 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0298 363 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Gso1g0298 363 PANTHER OS01G0750732 PROTEIN 1 363 - -
Gso1g0298 363 PIRSF ILK 34 354 - -
Gso1g0298 363 Pfam Protein kinase domain 66 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0298 Gso-Chr1 3583626 3588693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0298 48 346 Receptor kinase-like Gene Family AT3G58690 46.711 6.47e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Gso1g0298 Pkinase 8.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0298 - - gmx:100796654 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0298 1 3583626 3588693 Gso2g0267 2 2872833 2876549 GST