Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0288 ATGGCTAATCAGCAAATAATCAACCATGCTTCTTCTTCTTCTTGTGTGGCCTCTCTCAAAAGATATGATGTTTTTCTTAGCTTTCGAGGAGAGGACACTCGCAAAATCATCACAAGCCATCTCTACCATGCTCTCTTCCAAGCCGAACTGGCAACCTACATAGACTACAGGCTTCAAAAGGGTGATGAGATCTCGCAAGCTCTCATTGAAGCCATTGAAGAGTCACAGGTATCCGTCATCATCTTCTCAGAAAAGTATGCTACCTCCAAATGGTGCTTGGATGAAATCACCAAGATTATAGAATGCAAGGAGGGTCAAGGACAAGTTGTTATACCCGTCTTCTATAAAATAGATCCATCACATATAAGGAAGCAACAAGGGTCTTTCAAGCAAGCGTTTGTGGAACACGAGCAAGATCTTAAGATCACAACTGATAGGGTGCAAAAATGGAGAGAAGCTCTCACAAAAGCAGCTAATTTGGCTGGGTGGGACTTTCAAACTTATAGGACCGAGGCTGAATTCATTAAGGACATTGTTAAAGATGTTTTACTCAAACTGAATCTCATATACCCAATTGAATTGAAAGGACTGATTGGAATCGAGGGAAACTATACCAGGATTGAATCATTATTGAAAATTGACTCAAGAAAAGTTCGAGTGATCGGAATATGGGGCATGGGTGGCATTGGTAAGACTACCCTGGCAACCGCCTTATATGCCAAACTGTTTTCTCGATTTGAAGGTCATTGCTTTCTGGGAAATGTAAGGGAACAAGCAGAGAAGCAAGGTTTAGATTTCTTACGCACAAAACTTTTCTCTGAGTTGTTACCAGGAGAAAATCATCTTCATGAAAATATGCCCAAAGTTGAATATCATTTTATAACCAGAAGACTTAAACGAAAAAAGGTTTTTCTGGTTTTGGATGATGTGGCTTCCTCAGAACAATTAGAAGATCTAATCGATGATTTTAATTGCTTCGGACCAGGAAGTAGAGTGATTGTAACAACTAGAGATAAGCACATATTTAGCTATGTTGATGAGATATATGAAGTAAAGGAATTGAACGACCTTGACTCTCTTCAACTTTTCTGTTTGAATGCCTTCAGAGAAAAGCATCCCAAGAATGGATTTGAAGAGCTATCAGAAAGTGTAATTGCCTATTGCAAAGGTAACCCTTTGGCTTTAAAAGTTTTGGGTGCACGTCTTCGTTCAAGAAGTGAACAAGCATGGTACTGTGAATTGAGAAAGCTCCAAAAGATTCCAAATGTGAAAATTCATAATGTGTTAAAATTGAGTTTTGATGACTTAGATCATACTGAGCAGGAAATATTTCTAGACATTGCATGCTTCTTCAAAGGAGAATATAGAGACCACATAATAAGTCTGCTGGAAGCTTGCAATTTCTTTCCAGCCATTGGGATAGAAGTCCTTGCAGATAAGTCTCTCATAACTATTTCTCCTGAAGATACAATAGAAATGCATGACTTAATACAAGAAATGGGTTGGAATATTGTTCATCAAGAATCTATCAAAGACCCAGGAAAAAGAAGTCGGTTGTGGGATCCTGAGGAGGTGTTTGATGTTTTAAAATATAACAGGGGAACTGAAGCAATAGAAGGCATCATTTTAGATTTGTCTAAAATTGAGGATCTACATTTGAGCTTTGACTCCTTTACAAAAATGACTAACGTAAGATTTCTTAAATTTTATTATGGAAAGTGGAGTAGCAAAGGTAAAATTTACCTTCCTAAGAATGGTCTTAAGTCATTGTCTGACAAATTAAGGCACCTTCAATGGCATGGATACTGTTTGGAGTCTTTGCCATCAACCTTTTCTGCTAAATTCCTTGTTGAGCTTGTCATGCCCTACAGCAACCTTCAAAAGCTTTGGGACGGAGTTCAGAATCTTGTGAATCTAAAGGACATTGACCTTAGATACTGCGAAAACCTGGTTGAGGTCCCAGACTTATCCAAGGCCACAAATCTGGAAGATTTATCTCTTTCTCAGTGTAAAAGTCTGCGTCAGGTTCATCCATCCATTTTGTCTCTCCCAAAGCTTCAGAGTCTGGATTTAGAAGGCTGCATTGAGATTCAAAGTCTTCAAAGTGACGTTCATTTAGAATCTCTCCAAGACCTTCGTCTCAGCAACTGCTCATCCCTCAAGGAATTTTCAGTGATGTCAGTGGAACTTCGAAGATTATGGTTAGATGGCACACATATCCAAGAATTGCCCGCATCAATTTGGGGTTGTACAAAACTCAAGTTTATTGATGTACAAGGTTGTGACAACCTTGACGGTTTTGGGGACAAGTTGTCTTATGATCCAAGAACAACATGTTTTAATAGTCTGGTCCTTTCTGGGTGCAAACAACTCAATGCATCGAATCTAGATTTTATCCTTGTTGGTATGCGGTCTTTAACATCGCTAGAGTTGGAAAATTGTTTCAACTTACGAACACTCCCTGATAGCATTGGCTTGCTGTCATCATTGAAACTCTTAAAACTAAGCAGAAGTAATGTTGAGAGCTTGCCTGCAAGCATCGAGAATCTTGTAAAGTTGAGAAGGCTTTATTTAGATCACTGCATGAAACTTGTGTCCCTGCCAGAACTTCCAGAGTCCCTGTGGTTGTTAAGTGCAGTTAACTGTGCATCTTTGGTGACAAACTTCACTCAGCTGAACATACCCTTTCAACTTAAACAAGGACTTGAAGATCTCCCTCAATCTGTTTTCCTCCCTGGAGACCATGTTCCTGAAAGGTTCAGCTTTCATGCTGAAGGGGCTTCAGTAACTATTCCGCATCTTCCACTTTCTGACTTATTATGCGGCTTAATTTTTTGCGTCTTTCTTTCTCAGTCACCCCCACATGGAAAATATGTTTATGTTGATTGCTTTATCTACAAAAATTCCCAAAGGATCGATGGCAGAGGCGCCAGACTTCACGATCAGAATTTGATTTTGGATCATGTGTTTCTTTGGTTTGTTGACATAAAACAATTTGGAGATGATTCCTTGCTTAGGAGGTTACAAAAAGGTGAAGCGTGTGATCCTTCCAACATATCATTTGAATTCTTGGTGGAAGATGAGGATGGAGAATGGTCAACAAAGAATATAAAGGGGTGTGGTATCTATCCTATATATGTCCCTGGACATGGTTATTCCTCTAAACAAAAGGGGTTGGAGTTGGGGATTGAGGATAGCTCTAGAGATATTGTTGAGTTAGAACCCGACAGTTCTAATGATATTGATGAGTTACAAGTTAAAGGAACTAATCATAACAATGAAGATGACCAGACTAAGAAATTGCAGGAAGTTGTGCACCAAACAATTACTACAGGTTTGCAGCATGTAAAAGTGGACTCAAATGACAATTCTTCATGTCACAGTTTTGTAGCAGATGGTACAAAGAGAGAATCACATAGTTTCAAGGAAGAAGATTACTATATAAGTTCAACACCTGAAAATCAAATTATCCCCTTTGACACTCCAAGTGCTTCCAACACCGATTCAAATCTGAGTATTGAAGTGTTAGAAGAAACAGACTTGACATACAATCAAGTAGACAAATGTTCTACTCCAATCATGTTAGATGAAGCTCGTGCTCCTGAGGAGAATGACAATCTGCATCAAGAACCAGATTGGGATCCAATTGCTGAGCTTGAGAACATGTTATGTGATAGTTATAAGAGTTTTCCTATGTCAACTCTCTCAACTTCTATTTCAGGTCCAAATGTGGCAGCTATCCTTGAAAAATTAGAGACCCTTTTGGAGACCTCCCTTGAAAATATCTCTTGTGATGATGAAGTCAAGCAACAATTCCATCAAGTGTTGGATCAACTCGTGCAATTTGAAGACCAAGTTCCTGTTAAGCTTCGCCCTGTAATTAACAAGTTAAAAACTTTCATTGAAGGTGTCGATGCCAGATATGTTACTGCCCAAGAAATTATCCAAGATTATAATAAGCTTCTCCAATCAAGGTCTCCTCTATCAAAGCATTTGGAAAGTGCCAGAGCCCGACAATACCAAATTAATTCTAAAGTCTCTGAAGCTAAAATACAAGTTGAAAAGATCAATTTTGAGATTGTTAAACTAGAACAAAAGATAAGGGTTTTAATTGAGACTAGAAACAAGCTAAAGAGAGACTTGGACAATTGTGATGTTGAGAATAACAAGCTAAAGACTAAGGCTGCACAATGGTTGCCAAAATGCAAAACTGTCACCACAGCTTTGAAGGAATCCAAGACTTCTTACAAAGAGGCCATAACCAATAAGAAGAAAGCCGAACATGAATGGGATGATCTAAAGAAGAACTTTGTGGCGAAAAGATTTGAATTGTCACCAGCTTATGCATATTTTGACATTTAG 4362 0.3865 MANQQIINHASSSSCVASLKRYDVFLSFRGEDTRKIITSHLYHALFQAELATYIDYRLQKGDEISQALIEAIEESQVSVIIFSEKYATSKWCLDEITKIIECKEGQGQVVIPVFYKIDPSHIRKQQGSFKQAFVEHEQDLKITTDRVQKWREALTKAANLAGWDFQTYRTEAEFIKDIVKDVLLKLNLIYPIELKGLIGIEGNYTRIESLLKIDSRKVRVIGIWGMGGIGKTTLATALYAKLFSRFEGHCFLGNVREQAEKQGLDFLRTKLFSELLPGENHLHENMPKVEYHFITRRLKRKKVFLVLDDVASSEQLEDLIDDFNCFGPGSRVIVTTRDKHIFSYVDEIYEVKELNDLDSLQLFCLNAFREKHPKNGFEELSESVIAYCKGNPLALKVLGARLRSRSEQAWYCELRKLQKIPNVKIHNVLKLSFDDLDHTEQEIFLDIACFFKGEYRDHIISLLEACNFFPAIGIEVLADKSLITISPEDTIEMHDLIQEMGWNIVHQESIKDPGKRSRLWDPEEVFDVLKYNRGTEAIEGIILDLSKIEDLHLSFDSFTKMTNVRFLKFYYGKWSSKGKIYLPKNGLKSLSDKLRHLQWHGYCLESLPSTFSAKFLVELVMPYSNLQKLWDGVQNLVNLKDIDLRYCENLVEVPDLSKATNLEDLSLSQCKSLRQVHPSILSLPKLQSLDLEGCIEIQSLQSDVHLESLQDLRLSNCSSLKEFSVMSVELRRLWLDGTHIQELPASIWGCTKLKFIDVQGCDNLDGFGDKLSYDPRTTCFNSLVLSGCKQLNASNLDFILVGMRSLTSLELENCFNLRTLPDSIGLLSSLKLLKLSRSNVESLPASIENLVKLRRLYLDHCMKLVSLPELPESLWLLSAVNCASLVTNFTQLNIPFQLKQGLEDLPQSVFLPGDHVPERFSFHAEGASVTIPHLPLSDLLCGLIFCVFLSQSPPHGKYVYVDCFIYKNSQRIDGRGARLHDQNLILDHVFLWFVDIKQFGDDSLLRRLQKGEACDPSNISFEFLVEDEDGEWSTKNIKGCGIYPIYVPGHGYSSKQKGLELGIEDSSRDIVELEPDSSNDIDELQVKGTNHNNEDDQTKKLQEVVHQTITTGLQHVKVDSNDNSSCHSFVADGTKRESHSFKEEDYYISSTPENQIIPFDTPSASNTDSNLSIEVLEETDLTYNQVDKCSTPIMLDEARAPEENDNLHQEPDWDPIAELENMLCDSYKSFPMSTLSTSISGPNVAAILEKLETLLETSLENISCDDEVKQQFHQVLDQLVQFEDQVPVKLRPVINKLKTFIEGVDARYVTAQEIIQDYNKLLQSRSPLSKHLESARARQYQINSKVSEAKIQVEKINFEIVKLEQKIRVLIETRNKLKRDLDNCDVENNKLKTKAAQWLPKCKTVTTALKESKTSYKEAITNKKKAEHEWDDLKKNFVAKRFELSPAYAYFDI* 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0288 1453 Pfam NB-ARC domain 207 419 IPR002182 GO:0043531
Gso1g0288 1453 SUPERFAMILY L domain-like 513 885 - -
Gso1g0288 1453 Gene3D Ribonuclease Inhibitor 524 728 IPR032675 -
Gso1g0288 1453 Gene3D Ribonuclease Inhibitor 729 901 IPR032675 -
Gso1g0288 1453 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 163 IPR035897 -
Gso1g0288 1453 SMART till_3 21 160 IPR000157 GO:0007165
Gso1g0288 1453 Coils Coil 1346 1394 - -
Gso1g0288 1453 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 1199 - -
Gso1g0288 1453 PRINTS Disease resistance protein signature 220 235 - -
Gso1g0288 1453 PRINTS Disease resistance protein signature 297 311 - -
Gso1g0288 1453 PRINTS Disease resistance protein signature 388 402 - -
Gso1g0288 1453 PRINTS Disease resistance protein signature 704 720 - -
Gso1g0288 1453 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 1199 IPR044974 GO:0006952
Gso1g0288 1453 Pfam TIR domain 22 191 IPR000157 GO:0007165
Gso1g0288 1453 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Gso1g0288 1453 SUPERFAMILY "Winged helix" DNA-binding domain 424 530 IPR036390 -
Gso1g0288 1453 Pfam Leucine Rich Repeat 615 634 IPR011713 -
Gso1g0288 1453 Gene3D - 353 437 IPR042197 -
Gso1g0288 1453 Coils Coil 1409 1436 - -
Gso1g0288 1453 Gene3D - 19 189 IPR035897 -
Gso1g0288 1453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 447 IPR027417 -
Gso1g0288 1453 Gene3D - 190 351 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0288 Gso-Chr1 3421133 3427831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0288 17 856 WRKY Transcription Factor Family AT4G12020 32.749 2.92e-117 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0288 - - gsj:114410062 2882.43