Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0283 ATGGCATCAAGATCATATGTTAATCTACTAGACTTAGCTGGAGGTTTACTGGATATTCCTCACACGCCAAAAACTATTCCAAGGATTATGACAGTTCCTGGAGTTATTTCTGATCTGGATGTTTGTGGTAGATATGATGGGGATTCTGATGTTAGCTCTTCTGGTTATCGGGAGCGGAAAATCCTTGTGGCAAACATGTTGCCATTGCAGGCCAAAAGAGATATTCAAACTGGTAAATGGTGTTTCAGTTTAGATGAGGATTCTATTCTGTTACAATTAAAAGATGGTTTTTCTTGTGACACTGAGGTGATCTATGTGGGATCCCTCAAGGTTGAAATAGATGCTCATGAGCAGGAAGAAGTTGCTCAGAAATTACTGGAGGACTTTAATTGCATACCTACCTTTCTACCCCATGATGTCCAGAAGAAGTTTTATTATGGCTTTTGCAAACAGCAGCTTTGGCCTCTCTTTCATTACATGCTACCTATGTTCCCTGATCATGGTGATCGGTTTGACCGCTCGTTGTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCGGACAAGGTTATGGAAATAATCAATCCTGATGACGATTTTGTTTGGGTTCAAGACTATCACTTGATGGTCTTGCCGACATTTCTGAGGAAGCGGTATAATCGCGTGAAGCTTGGATTCTTTCTTCACAGTCCTTTCCCTTCATCTGAAATTTACCGAACTTTGCCAGTAAGGGATGAAATTCTGAGGGGATTGTTGAATTCTGATTTAATTGGTTTCCATACATTTGATTATGCTCGCCACTTCCTTTCTTGTTGCAAAAGAATGCTAGGTCTTGACTATGAATCTAAACGAGGACATATAGGACTTGATTACTTTGGCCGTACTATATTTATCAAAATTCTTCCTGTAGGCATTCATATGGGCAGGCTTGAATCTGTATTAAATCTTCAATCTACATCAGCTAAATTGAAAGAGATTCGGGAAGAGTTTAAGGGTAGGAAGGTGATTCTTGGTGTTGATGACATGGATATCTTTAAGGGCATCAGTCTGAAGCTTCTAGCTGTTGAGCAGCTACTGCAGCAGAATCAAGATTTGAAGGGCAAAGTTGTCCTAGTACAGATTGTGAATCCTGCTAGGAGTTCAGGCAAGGATGTTCAGGAAGCAAAGAAGGAAACAAATTTAATTGCCCAGAGGATTAATGATACTTTTGGTTCAAACAATTATCAGCCAGTTATTCTCATTGACCGTCCTGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGTAGCAGAATGTTGCATTGTCAATGCTGTGAGGGATGGTATGAACTTAGTCCCCTACAAATACATTGTCTGTAGACAAGGAACTGCACTGATGGACAAAGCTTTGACTAGAAAAAGTGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCTCCTTCTTTAAGTGGAGCAATCAGGGTCAATCCCTGGAACATAGATGCTGTGGCTGATGCTCTGTATTCAGCTGTTACTATGAATGATTCAGAGAAGCAATTGAGGCATGAGAAACACTACCGGTACATCAGTTCTCATGATGTGGCATATTGGGCACGCAGCTTTGTGCAGGATTTGGAGAGAGCATGCAAAGATCATTACACCAAAAGATGCTGGGGAATGGGTTTGGGCCTAGGGTTTAGAGTTGTTTCTCTTTCTCCTGGTTTCAGAAAATTGTCTGTTGATCACATTGTTTCAGCTTACAAAAGAACCGGTAGAAGAGCCATATTTCTTGATTATGATGGTACTATCGTACCAAAATCTTCCATAAATAAGACCCCCAGCCCTGAAGTCATATCCGTGCTAAATGATATGTGTAATGATCCTAAAAATACTGTGTTCATTGTGAGTGGAAGGGGAAGAGATTCTTTAAGTAAGTGGTTTACTTCATGCAAAATGATTGGACTTGCAGCCGAACATGGATACTTTCTAAGGTGGAGTAAAGATTCTGAATGGGAAACCAGTCCCTTGTCTCCTGATCTTGATTGGAAGAAGATTGTGGAACCTGTCATGCAGTTGTATACAGAGGCAACTGATGGATCTAATATTGAAACTAAGGAAAGTGCTTTGGTCTGGCATCATCAATATGCAGACCCCGACTTTGGCTCATGCCAAGCCAAAGAATTGTTAAATCATCTGGAAAGTGTCCTCGCTAATGAACCTGCAGTTGTTACCAGGGGCCGGCATATTGTTGAAGTCAAGCCACAGGGGTTAAACAAGGGCTGGGTAGCTGAAAAGGTTCTTTCCAATATGGTTAATGATGGTAATCCACCAGATTTTGTGATGTGTGTGGGAGATGACATTTCCGATGAAGACATGTTTGAGAGCATATTAAGGACAGTTTCATGCCCTTCATTGCCAGTAGTTCCAGAGATCTTTGCCTGCACTGTAGGTCAGAAACCTAGCAAGGCCAAATATTATCTTGATGACCCTGCTGATGTCATGAAGTTGCTTCAAGGCCTTGGTGCTTCATCTAAGCCAAAGCCAAGGCATCTAGCACAATTCCAAGTTTCTTTTGAGAGCACGGTTTGA 2583 0.4127 MASRSYVNLLDLAGGLLDIPHTPKTIPRIMTVPGVISDLDVCGRYDGDSDVSSSGYRERKILVANMLPLQAKRDIQTGKWCFSLDEDSILLQLKDGFSCDTEVIYVGSLKVEIDAHEQEEVAQKLLEDFNCIPTFLPHDVQKKFYYGFCKQQLWPLFHYMLPMFPDHGDRFDRSLWQAYVSANKIFADKVMEIINPDDDFVWVQDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCKRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLQSTSAKLKEIREEFKGRKVILGVDDMDIFKGISLKLLAVEQLLQQNQDLKGKVVLVQIVNPARSSGKDVQEAKKETNLIAQRINDTFGSNNYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTALMDKALTRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADALYSAVTMNDSEKQLRHEKHYRYISSHDVAYWARSFVQDLERACKDHYTKRCWGMGLGLGFRVVSLSPGFRKLSVDHIVSAYKRTGRRAIFLDYDGTIVPKSSINKTPSPEVISVLNDMCNDPKNTVFIVSGRGRDSLSKWFTSCKMIGLAAEHGYFLRWSKDSEWETSPLSPDLDWKKIVEPVMQLYTEATDGSNIETKESALVWHHQYADPDFGSCQAKELLNHLESVLANEPAVVTRGRHIVEVKPQGLNKGWVAEKVLSNMVNDGNPPDFVMCVGDDISDEDMFESILRTVSCPSLPVVPEIFACTVGQKPSKAKYYLDDPADVMKLLQGLGASSKPKPRHLAQFQVSFESTV* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0283 860 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0003824|GO:0005992
Gso1g0283 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 851 IPR001830 GO:0003824|GO:0005992
Gso1g0283 860 Gene3D Glycogen Phosphorylase B; 313 528 - -
Gso1g0283 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Gso1g0283 860 Gene3D - 720 850 IPR023214 -
Gso1g0283 860 Gene3D - 590 706 IPR023214 -
Gso1g0283 860 CDD HAD_TPP 592 833 - -
Gso1g0283 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
Gso1g0283 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Gso1g0283 860 Gene3D Glycogen Phosphorylase B; 53 312 - -
Gso1g0283 860 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 851 - -
Gso1g0283 860 TIGRFAM T6PP: trehalose-phosphatase 590 836 IPR003337 GO:0003824|GO:0005992
Gso1g0283 860 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Gso1g0283 860 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 793 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0283 Gso-Chr1 3358617 3364008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0283 1 860 Trehalose Biosynthesis Gene Families AT1G23870 73.041 0.0 1334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0283 K16055 - gmx:100795250 1741.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0283 1 3358617 3364008 Gso2g0279 2 3024035 3029323 GST
Gso1g0283 1 3358617 3364008 Gso18g1100 18 19818757 19824024 PCT
Gso18g1100 18 19818757 19824024 Gso1g0283 1 3358617 3364008 PCT