Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0280 ATGGCTTCATCAATGAGGATCTCAAGGCTGCTCTCTCGTTCTTTTCTTTCTGCTTCCACTACTCCTTTGTTCTCTAGAGGGCTCAGTAAATTCAGCACTGCTGCTGCAATTGAAGAACCAATCAAACCACCAGTTAAAGTAGAACACACCCAGCTCTTAATCGATGGAAAATTCGTTGATGCTGCTACTGGCAAAACTTTTCCAACGTTGGACCCCAGGACAGGAGATGTGATTTCTCATGTTGCTGAGGGTGACCATGAAGATGTTGATCGAGCAGTTGCAGCTGCTCGCAAAGCCTTCGACCATGGACCTTGGCCAAAGATGACAGCCTATGAAAGACAAAGGATATTGCTGCGTGCTGCTGATCTGTTTGAAAAGCACAATGATGAGCTTGCTGCTCTTGAGACTTGGGATAATGGGAAGCCATATGAACAATCTGCTCAAATCGAAATTCCAATGCTGGTTCGCCTATTTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGGCCATATCATGTGCAAACATTGCATGAACCCATTGGTGTTGCTGGTCAGATCATTCCGTGGAACTTCCCTCTTGTCATGTTTGCCTGGAAGGTTGGGCCAGCATTGGCCTGTGGTAACACCATTGTTCTCAAAACAGCTGAGCAGACTCCATTATCTGCTTTGTATGCATCAAAGTTGCTTCATGAGGCTGGACTTCCTCCTGGCGTTCTGAATGTAATATCTGGCTTTGGTCCTACCGCTGGTGCTGCCATTGCTAGTCACATGGACATAGATAAGCTTGCTTTCACTGGTTCAACCGAAACTGGAAAAGTTGTCCTTGAATTGGCAGCTAGAAGTAATCTTAAGCCTGTTACTCTGGAGCTTGGTGGGAAATCTCCTTTTATAGTATGCGAAGATGCTGATGTAGATGAGGCTGTTGAGCTAGCACACTTTGCATTATTCTTTAATCAGGGACAATGCTGCTGTGCTGGGTCTAGAACATTTGTACACGAACGTGTGTACGATGAATTTATTGAGAAAGCAAAGGCACGTGCTTTGAAGCGTGCTGTTGGTGATCCATTCAAGGGGGGAATAGAGCAAGGTCCTCAGATTGATTCAGAACAATTTCAGAAAATACTGAAGTATATTAGGTCCGGTGTTGAAAGTGGAGCTACTCTTGAAACTGGAGGAGATAGATTTGGCAACTCAGGCTTCTATATTCAGCCTACTGTCTTCTCAAATGTTAAGGATGACATGCTGATTGCAAAGGAAGAGATCTTTGGTCCAGTGCAAACCATATTAAAATTCAAGGACCTTGATGATGTGATTCAAAGAGCAAATAACACACACTATGGCCTTGCAGCAGGGGTGTTCACAAAAAACATTAACACAGCTAACACTTTGACTAGAGCATTGCGAGTTGGAACAGTGTGGATTAACTGCTTTGATACATTTGATGCAGCAATTCCCTTTGGAGGGTACAAAATGAGTGGCCAAGGAAGAGAAAAAGGAGAATACAGTCTCAAGAACTACTTGCAAGTGAAGGCTGTTGTTACATCCTTGAAGAACCCTGCTTGGCTTTGA 1593 0.4413 MASSMRISRLLSRSFLSASTTPLFSRGLSKFSTAAAIEEPIKPPVKVEHTQLLIDGKFVDAATGKTFPTLDPRTGDVISHVAEGDHEDVDRAVAAARKAFDHGPWPKMTAYERQRILLRAADLFEKHNDELAALETWDNGKPYEQSAQIEIPMLVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLVMFAWKVGPALACGNTIVLKTAEQTPLSALYASKLLHEAGLPPGVLNVISGFGPTAGAAIASHMDIDKLAFTGSTETGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDEAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFIEKAKARALKRAVGDPFKGGIEQGPQIDSEQFQKILKYIRSGVESGATLETGGDRFGNSGFYIQPTVFSNVKDDMLIAKEEIFGPVQTILKFKDLDDVIQRANNTHYGLAAGVFTKNINTANTLTRALRVGTVWINCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTSLKNPAWL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0280 530 CDD ALDH_F2BC 47 522 - -
Gso1g0280 530 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 18 530 - -
Gso1g0280 530 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 300 489 IPR016163 GO:0016620
Gso1g0280 530 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 54 518 IPR016162 GO:0016491
Gso1g0280 530 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 18 530 - -
Gso1g0280 530 Pfam Aldehyde dehydrogenase family 59 520 IPR015590 GO:0016491
Gso1g0280 530 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 296 303 IPR029510 GO:0016491
Gso1g0280 530 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 324 335 IPR016160 GO:0016491
Gso1g0280 530 SUPERFAMILY ALDH-like 46 524 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0280 Gso-Chr1 3296495 3300774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0280 3 530 Aldehyde Dehydrogenase Gene Family AT3G48000 76.164 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0280 K00128 - gmx:100786773 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0280 1 3296495 3300774 Gso2g0283 2 3078915 3083306 GST
Gso1g0280 1 3296495 3300774 Gso18g1107 18 20118984 20122742 PCT
Gso18g1107 18 20118984 20122742 Gso1g0280 1 3296495 3300774 PCT