Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0268 ATGAATTTAAGAACTCCTTCAGAAACGACTCAGCACATGAACACTGGCCAGTTAGTTTTTACCTACGAAAAGGTTGCAGAGATCACGAACGGGTTTGCTAGTGAAAACATAATAGGGGAGGGGGGATTTGGGTATGTTTACAAGGCTTCCATGCCTGATGGCAGAGTGGGAGCACTCAAATTATTGAAGGCTGGAAGTGGGCAAGGAGAAAGGGAGTTCAGGGCGGAGGTGGACATCATCAGCCGAATCCATCATCGCCATTTGGTGTCATTAATTGGTTATTGCATATCTGAACAGCAAAGAGTGCTTATCTATGAATTCGTTCCTAATGGGAATCTCAGTCAGCACTTGCATGGAAGTAAATGGCCAATTTTGGATTGGCCAAAGAGGATGAAGATAGCAATTGGCTCTGCAAGGGGCCTGGCATATCTCCATGATGGCTGCAACCCAAAGATTATTCACAGAGATATTAAATCAGCAAACATACTTTTGGATAATGCTTATGAGGCACAGGTTGCAGACTTTGGACTTGCCAGGCTAACCGATGATGCTAATACCCACGTATCAACTAGGGTGATGGGGACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCTTTTGGAGTTGTCCTCCTTGAGCTTATAACTGGAAGGAAACCTGTTGATCCAATGCAGCCCATAGGAGAGGAGAGTTTGGTTGAGTGGGTGGCTAGATCCTTAGATAGCGGCAACCAACTATATGATCTATCAAATGGGGTGAAATATGGCCAGAGCACTGTTTATGATTCTGGCCAGTATAATGAAGACATTGAGATATTCAAAAGGATGGTTAATGGCAGCTTTGATGATTCTGAGTTTGATATGAACAGCATGGAATACCGTTCAACTGTTTCAAGAGAAATGTCTGGATCCAGACATTCAAGGATGCCATATAGTGAAGGTAGTGATTCAGATTTTAGAGTTTTCCACGGCCAACGAAGCAATACGCAGAACATGTCTTGA 1035 0.4319 MNLRTPSETTQHMNTGQLVFTYEKVAEITNGFASENIIGEGGFGYVYKASMPDGRVGALKLLKAGSGQGEREFRAEVDIISRIHHRHLVSLIGYCISEQQRVLIYEFVPNGNLSQHLHGSKWPILDWPKRMKIAIGSARGLAYLHDGCNPKIIHRDIKSANILLDNAYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPMQPIGEESLVEWVARSLDSGNQLYDLSNGVKYGQSTVYDSGQYNEDIEIFKRMVNGSFDDSEFDMNSMEYRSTVSREMSGSRHSRMPYSEGSDSDFRVFHGQRSNTQNMS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0268 344 Gene3D Phosphorylase Kinase; domain 1 2 107 - -
Gso1g0268 344 PANTHER RECEPTOR-LIKE KINASE 247 344 - -
Gso1g0268 344 PANTHER RECEPTOR-LIKE KINASE 1 246 - -
Gso1g0268 344 MobiDBLite consensus disorder prediction 308 344 - -
Gso1g0268 344 SUPERFAMILY Protein kinase-like (PK-like) 11 247 IPR011009 -
Gso1g0268 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Gso1g0268 344 SMART serkin_6 32 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0268 344 Gene3D Transferase(Phosphotransferase) domain 1 108 300 - -
Gso1g0268 344 Pfam Protein tyrosine and serine/threonine kinase 35 237 IPR001245 GO:0004672|GO:0006468
Gso1g0268 344 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 246 - -
Gso1g0268 344 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 247 344 - -
Gso1g0268 344 ProSiteProfiles Protein kinase domain profile. 32 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0268 344 CDD STKc_IRAK 38 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0268 Gso-Chr1 3186378 3190076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0268 13 324 Trihelix Transcription Factor Family AT1G70460 54.645 3.57e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso1g0268 PK_Tyr_Ser-Thr 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0268 - - gsj:114401075 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0268 1 3186378 3190076 Gso2g0296 2 3194048 3198006 GST