Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0262 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTATGTAGAATGTGGATTCTGTGCCACCATTTTAATGGTAAGTGTCCCAAGCAGCAGTTTGTCAATGGTGGTGACAGTAAAATGCGGACACTGCACAAGCGTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGCCATCTTGAGCCAAAAGAAAGTAGTTCAGAACAAGATGCTAACAAGACTTTGAAGAGACATAATGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTCATTCCAATGAGTAATGTTGTCAATAAACCCCCAGAGAAGAGACAGAGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCCCACAGGGAAGCTTTTAGTACAGCAGCAAAAAACGTAAGTGGGCCAATTTCCCCCCAACTCAGTGCAAAGAAGATGAAGAGAGCTGTAGCAGCCAGACAGATCAACATGTGGATCTTGACTCCCAAGTGGACCCTAATGCTGTGGTCAATGAAGAAGAAGGTCAAGGTTTACGTGGAAGAAAGGTCCCAAAGAATTCCATATTGGAAAGGACATCGTTTGAATGAAGAAAGTTCAGATTATGTGACATAA 681 0.417 MSTLNHLFDLPEQICYVECGFCATILMVSVPSSSLSMVVTVKCGHCTSVLSVNMMKASFVPFHLLASLSHLEPKESSSEQDANKTLKRHNASMMTYSDCEEEDVIPMSNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHREAFSTAAKNVSGPISPQLSAKKMKRAVAARQINMWILTPKWTLMLWSMKKKVKVYVEERSQRIPYWKGHRLNEESSDYVT* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0262 226 Gene3D High mobility group box domain 110 209 IPR036910 -
Gso1g0262 226 SUPERFAMILY HMG-box 109 152 IPR036910 -
Gso1g0262 226 PANTHER AXIAL REGULATOR YABBY 4 1 168 - -
Gso1g0262 226 Pfam YABBY protein 11 155 IPR006780 GO:0007275
Gso1g0262 226 PANTHER PROTEIN YABBY 6-RELATED 1 168 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0262 Gso-Chr1 3111965 3114421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0262 2 155 C2C2-YABBY Transcription Factor Family AT1G23420 65.244 1.59e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso1g0262 YABBY 1e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0262 K25796 - gmx:100806755 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0262 1 3111965 3114421 Gso18g1143 18 21229045 21232083 PCT
Gso18g1143 18 21229045 21232083 Gso1g0262 1 3111965 3114421 PCT