Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0253 ATGGATGGAATGTACGGAGTGCCGCCGGAGTACGCCGACAAGGCCCTCATGACGCCGGAGAATCTGATTTTCCCGCCGGACTACCACCACGCCTTCCTCTCCGCCGGCCGGATTCCGCTGTTCGGATCCGACGAGCTCTTCTCTTCCGCCGACGGAATTCACAGGCAGCAGGACGAAGATGACGTGGCAACCACCACCGTCATGAAGGCCAAAATCGTCTCTCATCCTCAGTACTCTCGCCTCCTCCAAGCTTACATCGACTGCCAGAAGGTTGGGGCGCCTCCGGAAATAGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAACGACCTATGCAAGAGCGACGTCGTTTCTTCTTCCACGTGCTTTGGAGCCGATCCCGAGCTTGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAGTATAAATCCGACTTGGCTCGCCCTTTTGAGGAAGCAACCACCTTCCTCAACAAGATCGAAATGCAGCTCAGCCATCTCTGCACTGGCGCTTCCGTTTCGAACGTTTCTGATGATGGGGGGGTGTCTTCGGACGAAGATTTGAGCACCGGAGATGGTGATGCTCAAGATGGCCAATTAAAGGGTGAAGATCGTGAGCTCAAAGATAGGCTTTTACGTAAGTTTGGGAGTCACATCGGTACTTTGAAACTCGAGTTTTCAAAGAAGAAAAAGAAGGGTAAGCTTCCGAAGGAAGCAAGACAAACATTGCTTCAATGGTGGAATGTTCACTACAAATGGCCTTACCCTACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATAAACCAAAGAAAACGACATTGGAAACCATCCGAGAATATGCAGTTTTCTATGATGGAAAATCTTAACGGACGGTTCCTTGCTGATGAATGA 930 0.5 MDGMYGVPPEYADKALMTPENLIFPPDYHHAFLSAGRIPLFGSDELFSSADGIHRQQDEDDVATTTVMKAKIVSHPQYSRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKSDVVSSSTCFGADPELDEFMETYCDMLVKYKSDLARPFEEATTFLNKIEMQLSHLCTGASVSNVSDDGGVSSDEDLSTGDGDAQDGQLKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLADE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0253 309 CDD homeodomain 238 290 IPR001356 GO:0003677
Gso1g0253 309 SMART KNOX2_2 118 169 IPR005541 GO:0003677|GO:0005634
Gso1g0253 309 ProSitePatterns 'Homeobox' domain signature. 264 287 IPR017970 GO:0000981|GO:0006355
Gso1g0253 309 ProSiteProfiles 'Homeobox' domain profile. 226 289 IPR001356 GO:0003677
Gso1g0253 309 SMART HOX_1 228 293 IPR001356 GO:0003677
Gso1g0253 309 Pfam Homeobox KN domain 246 285 IPR008422 GO:0003677|GO:0006355
Gso1g0253 309 Gene3D - 225 299 - -
Gso1g0253 309 SMART ELK_2 206 227 IPR005539 GO:0003677
Gso1g0253 309 SMART KNOX1_2 66 110 IPR005540 GO:0003677|GO:0005634
Gso1g0253 309 ProSiteProfiles ELK domain profile. 206 226 IPR005539 GO:0003677
Gso1g0253 309 MobiDBLite consensus disorder prediction 179 203 - -
Gso1g0253 309 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 39 308 - -
Gso1g0253 309 Pfam KNOX1 domain 68 109 IPR005540 GO:0003677|GO:0005634
Gso1g0253 309 Pfam KNOX2 domain 122 168 IPR005541 GO:0003677|GO:0005634
Gso1g0253 309 SUPERFAMILY Homeodomain-like 227 298 IPR009057 -
Gso1g0253 309 Pfam ELK domain 206 227 IPR005539 GO:0003677
Gso1g0253 309 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0253 Gso-Chr1 2965853 2974595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0253 1 309 Homeobox Transcription Factor Family AT1G23380 65.455 1.25e-140 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso1g0253 KNOX2 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0253 - - gmx:100794719 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0253 1 2965853 2974595 Gso18g1151 18 21859296 21871901 PCT
Gso18g1151 18 21859296 21871901 Gso1g0253 1 2965853 2974595 PCT