Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0232 ATGCCTCTTCTTCTCTCACGCACCCCACCATCTTCTTTTCCTCTAACCCCTCTTAGAAACGCACGCGCGCCTCTAATCACACCCTCCCAGAAGCGCTTCACTCTCGCCGCAACGCGAATCGTTCTCTTCACTTCCCGCCGCCGCATTCTAGCATCCCCTCCTCCTCCTCCCAAGTGCGCCTCCATCAACGGAATCTCTGTCCCGAACAACCCAGAAGCTTCCGGAGAACAACAAGTCTATAGTGCTTCCGGGCTTCTCGACCGGATTCGGAAATGGGTCGGGTTTTTACCGTCGATTCTTCCCGGCGGACGGTGGTGGGAGTTCTCCGGCGACGTCGACGTTCAGGTGGTGGCGCAGCCGGTGACCGTGTGGCGCGCGCTCGGGAAAATGTGGGACCTTGTCGCGCGTGACAGATGGGTCATCTTCGCTGCATTCTCTGCTCTCATTGTTGCTGCAGTTTCGGAGATTTCGATACCGCATTTCTTGACAGCATCCATCTTCTCAGCACAGAGTGCGGACCTTGCTGTTTTTCACCGGAATGTGCGGTTGTTGGTTCTGTTGTGCGTGGCTTCGGGAATATGCAGTGGGATACGAGGTTGCTTTTTTGGCATCGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACACTATACTCATCTCTTCTTCTGCAGGATATATCGTTTTTTGACAATGAAACAGTAGGTGATTTGACAAGTAGGCTTGGAGCGGATTGCCAACAAGTGTCAAGAGTTATTGGAAATGATCTTAATTTGATAATGCGCAACGTTCTTCAGGGGGGAGGTTCATTAATCTACTTGTTGATTTTATCTTGGCCACTTGGTTTATCTACATTGGTGGTATGCTCCATATTAGCAGCAGTTATGTTACGTTATGGAAGGTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCAAATGATGTAGCCCAAGAGACGTTCTCTCTTATTAGAACTGTGCGAGTTTATGGAACAGAAGAAGAAGAACATGGAAGGTATAAGTGGTGGCTGGAGAAATTAGCTGACATAAGCTTGCGACAAAGTGCTGCATATGGAGTTTGGAATTTTAGCTTTAACATTCTTTATCATTCAACTCAGGTTATCGCTGTGCTATTTGGAGGAATGTCTATTCTAGCGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATATTATACAGTGAATGGTTAATTTATTCTACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCAGTTGGGGCTAGCGAAAAAGTATTCCACTTAATGGATCTCTTACCTAGCAGCCAATTCATAGAAAGAGGGGTAAAGTTGCAGAGGTTAACAGGGTGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGGCCAATGGCATCTGTAGTGCAACATGTGAACTTTGTTGTCCATCCTGGAGAGGTGGTTGCAATAGTTGGACTTAGTGGTAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAATGGTCAGATTTTGATAGATGATATCCCTCTTAAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGCCAGGAACCGAAACTCTTCCGGATGGATATTAGTTCAAACATCAGATATGGATGCACCCAAGATGTAAAGCAGAAGGATATTGAATGGGCTGCAAAGCAGGCCTATGCCCACAATTTTATCTCAGCACTTCCCAATGGTTATGAAACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTAGATGCTGAAAGTGAGCATAATGTTAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCAACCAGAAGTGTCATAGTCATTGCACATAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGGGAAATTGTTGAGATGGGAAGTCACAGGGAACTTCTCTTAAAAGATGGTTTGTATGCACGGTTAACCAGAAAACAGGCTGATGCCATGGCATGA 2106 0.4549 MPLLLSRTPPSSFPLTPLRNARAPLITPSQKRFTLAATRIVLFTSRRRILASPPPPPKCASINGISVPNNPEASGEQQVYSASGLLDRIRKWVGFLPSILPGGRWWEFSGDVDVQVVAQPVTVWRALGKMWDLVARDRWVIFAAFSALIVAAVSEISIPHFLTASIFSAQSADLAVFHRNVRLLVLLCVASGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLIMRNVLQGGGSLIYLLILSWPLGLSTLVVCSILAAVMLRYGRYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGVWNFSFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLLPSSQFIERGVKLQRLTGCIEFLNVSFHYPSRPMASVVQHVNFVVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDDIPLKDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCTQDVKQKDIEWAAKQAYAHNFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGEIVEMGSHRELLLKDGLYARLTRKQADAMA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0232 701 Gene3D - 447 700 IPR027417 -
Gso1g0232 701 PANTHER ABC TRANSPORTER B FAMILY 81 700 - -
Gso1g0232 701 PIRSF ABC_prm/ATPase_B 65 701 - -
Gso1g0232 701 Pfam ABC transporter 476 623 IPR003439 GO:0005524
Gso1g0232 701 Gene3D ABC transporter type 1, transmembrane domain 124 442 IPR036640 GO:0005524|GO:0016021
Gso1g0232 701 SUPERFAMILY ABC transporter transmembrane region 129 439 IPR036640 GO:0005524|GO:0016021
Gso1g0232 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 696 IPR027417 -
Gso1g0232 701 Pfam ABC transporter transmembrane region 142 408 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso1g0232 701 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 423 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso1g0232 701 SMART AAA_5 484 672 IPR003593 -
Gso1g0232 701 ProSitePatterns ABC transporters family signature. 595 609 IPR017871 GO:0005524
Gso1g0232 701 CDD ABC_6TM_TAP 144 431 - -
Gso1g0232 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 457 695 IPR003439 GO:0005524
Gso1g0232 701 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 81 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0232 Gso-Chr1 2745287 2753510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0232 212 699 Calmodulin-binding Proteins AT2G36910 34.608 2.66e-72 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0232 - - gmx:100813359 1356.66