Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0228 ATGGAGGAAGCAATGCGACGTCTAAACGGGGTAGCTCCGATTCTCGGACCCGACCCGAAAGCTGACGGAGGAGTCGTCGCTGATAACCCGAAGCGTTCCTCCGCCGTGAACAAGAGGGCCTTAAGAGAAGACGGCGGCGGAGCGATGAGGTACCGCGGCGTGAGGCGCAGGCCGTGGGGGCGTTACGCGGCGGAGATAAGGGACCCTCAGTCGAAGGAGCGGCGGTGGCTGGGAACCTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGCGGCCTCAAGGCTCGCACCAACTTCGTCTACCCAACTTCTCCGCAACCTTCTTCCGCCACCACCGAACACTTCTTACCTAACTTCAACAACAGCAACAACTTTCACAAACACTCAGTCTTCAATCACCACCACGGTAACCGCCACATAACCGGTTCCACCACCTGCTTTGACCAGCCTCACGCCGTTGACTTTTTAGCTCCGCGAAACTCTTCTTCTTCTGCTCTCAACATGCTTCTCTTTCGCGACCTCGTTCACTCTAACCCTTCTTTGCTTTCTTCTTCCACTACTCATAACTTTCACGACCAGTTTTACAGCAAGGGTGCTTCTACTTTTTCGTCTTTACCTGGTGTTTCTTCTTCTTCTTCTTCTCTTGTTCCTTGTTATTCGGTGAACAATTCTTGTGGAGGCTCTTCATCTGTTAAGATGAACACTCACTGTGGAACTAATTTTTCTGAAAAAGGTGATGATGGTGATGGTTCTGGGTTTTTCTCTCGAGAGTCTTCGGATTCGGGGTTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAACGAAGCCTAATAAATGCGAGAGTCTGCCAAAAATGGAGACTTTTCGCAACCCTCAGGAGGAGTCGCTTCTTCTCCCTCCGCTTGTTTCTGAATCAACGCTTGTTTCCACCGCGCAAGAATGCTATGATGATGACACGAAGAAGGGGTTTCTGAAGAACGACAGTTTAGGTGTTTTTTCTTCTGATCATCAAGGTTTTCCCATGCAGCAATTCGACGCCTTTAATGGGTTTAGTAGTGTGCAGGCTATGGCTCTGGGGAATGAACAAATCATGATGAATCATGCAGAGAACTGTGTTGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATGCTTTTGCAATCAGAATGCAAAATACTTAA 1206 0.4959 MEEAMRRLNGVAPILGPDPKADGGVVADNPKRSSAVNKRALREDGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQPSSATTEHFLPNFNNSNNFHKHSVFNHHHGNRHITGSTTCFDQPHAVDFLAPRNSSSSALNMLLFRDLVHSNPSLLSSSTTHNFHDQFYSKGASTFSSLPGVSSSSSSLVPCYSVNNSCGGSSSVKMNTHCGTNFSEKGDDGDGSGFFSRESSDSGLLEEIVNKFLPKTKPNKCESLPKMETFRNPQEESLLLPPLVSESTLVSTAQECYDDDTKKGFLKNDSLGVFSSDHQGFPMQQFDAFNGFSSVQAMALGNEQIMMNHAENCVVEDVFQYQELLNAFAIRMQNT* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0228 401 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Gso1g0228 401 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Gso1g0228 401 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Gso1g0228 401 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Gso1g0228 401 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Gso1g0228 401 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Gso1g0228 401 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 401 - -
Gso1g0228 401 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Gso1g0228 401 MobiDBLite consensus disorder prediction 8 44 - -
Gso1g0228 401 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
Gso1g0228 401 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0228 Gso-Chr1 2695723 2697264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0228 49 368 AP2-EREBP Transcription Factor Family AT1G24590 35.474 8.44e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g0228 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0228 - - gmx:102669715 723.776