Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0224 ATGGAATTCGAGGATCAAGAGGAGCAGGAGGAGGAGCTGTGTATGGGTGGTGGAGCGGGCTACGATCCGACCCAGATGAAGATTCCGGTTGCGGCGGAGCCGGTGAGGAGCAGCAGCAGCAACGGCGGTGGCTGCGGAAGGGCGAGGTACAGGGAGTGTTTAAAGAACCACGCCGTCGGAATCGGAGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGGCGGCGGGGATGGAGGGTACGCTGGACGCGCTGAAATGCGCCGCGTGCAGCTGCCACCGCAACTTCCACCGCAAGGAGGCGGATTCCTCCGCCGTGGTCTCCCTCTCCGGCGGGGACCCGTACTTTCTTCCCCATCATCACCACCACCACCACCCTCCGCCGCCGCAGTTTTCGGGGTACTACCGGCATCCGGCGGGGTACCTTCACATGGGGGGACAACTCCGTTCGGCGGTGGGGGGGACGCTGGCGTTGCCGTCGACGTCCGGCGGCGGAGGAACTCAGAGCACGCGTGAGGACCAGGAAGACATTTCGAACAACCCTAGTGCAGGAGGAACAGGGTCCAAGAAACGGTTCAGAACAAAGTTCACAGTTGAACAAAAGGACAAAATGCTTGAACTTGCTGAGAAACTAGGGTGGAGGATTCAGAAACACGACGAGGCTGTGGTCCAAGCCTTCTGCGACGAAACTGGTGTCAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACCCTCGTTTGTTACAACGGTGGTGCATGA 765 0.6013 MEFEDQEEQEEELCMGGGAGYDPTQMKIPVAAEPVRSSSSNGGGCGRARYRECLKNHAVGIGGHALDGCGEFMAAGMEGTLDALKCAACSCHRNFHRKEADSSAVVSLSGGDPYFLPHHHHHHHPPPPQFSGYYRHPAGYLHMGGQLRSAVGGTLALPSTSGGGGTQSTREDQEDISNNPSAGGTGSKKRFRTKFTVEQKDKMLELAEKLGWRIQKHDEAVVQAFCDETGVKRHVLKVWMHNNKHTLVCYNGGA* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0224 254 SUPERFAMILY Homeodomain-like 179 246 IPR009057 -
Gso1g0224 254 Gene3D - 173 249 - -
Gso1g0224 254 MobiDBLite consensus disorder prediction 153 186 - -
Gso1g0224 254 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Gso1g0224 254 MobiDBLite consensus disorder prediction 153 190 - -
Gso1g0224 254 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Gso1g0224 254 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 247 - -
Gso1g0224 254 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 23 247 - -
Gso1g0224 254 Pfam ZF-HD protein dimerisation region 48 100 IPR006456 -
Gso1g0224 254 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 188 244 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0224 Gso-Chr1 2576910 2579014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0224 1 250 ZF-HD Transcription Factor Family AT4G24660 49.600 6.23e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso1g0224 ZF-HD_dimer 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0224 - - gmx:100795063 502.671