Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0214 ATGGCTTTCATTCGACAGGGCATGCAACATGTTCGAAATTACTATAACTCAGATGCTCAAATGATAAGAGGTGGCTTCCATCAGACATTCATATCTAGGACATACAAAACCAGTTTCTTGAAGCCGAGATCAAAGGTAGAGATCAAACTATTGGCTGCTAAGAAACACAGTGAAGCAGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAAATATCCTCCCCAACATAATCAAAAAGGACAAGGCATCAGTATTGGCAGAGACTATCAAGCAAGTGAAGGAGTTGAAGAAAAAAGTATCAAAACTGGAACAAGATAGTTCTAGTAATCCATCAAAGGATGTTGTTAAGTTTCCTAATGGAACAGATAAGTTGAATTTGGAAAGATGTAACAACGACGAGGGCATAGTGAAGGCCACGCTGAGTTGTGAGGATAGACTAGGATTGATGTCATCAATATCTGGGGCACTAGAGCAAGTGAAAGCCAAAGTGGTAAAGGCTGAGATAGTGAGTGTGGGAGGGAGAGCCAGAAGTGTGTTGTGGGTGCAAGGTCTTGGAAATGATGGTACGGGGACGCTCAAGAGCAAATTGAGGGTTGCAATGCAAAAGCCACCCAAGATGCAGCGTTTTACTCAGTAA 651 0.4209 MAFIRQGMQHVRNYYNSDAQMIRGGFHQTFISRTYKTSFLKPRSKVEIKLLAAKKHSEAEKRRRMRINGQYETLRNILPNIIKKDKASVLAETIKQVKELKKKVSKLEQDSSSNPSKDVVKFPNGTDKLNLERCNNDEGIVKATLSCEDRLGLMSSISGALEQVKAKVVKAEIVSVGGRARSVLWVQGLGNDGTGTLKSKLRVAMQKPPKMQRFTQ* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0214 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 112 IPR036638 GO:0046983
Gso1g0214 216 Pfam Helix-loop-helix DNA-binding domain 55 100 IPR011598 GO:0046983
Gso1g0214 216 PANTHER TRANSCRIPTION FACTOR BHLH131 9 214 - -
Gso1g0214 216 Coils Coil 90 110 - -
Gso1g0214 216 SUPERFAMILY ACT-like 142 191 IPR045865 -
Gso1g0214 216 CDD ACT_UUR-ACR-like 144 192 - -
Gso1g0214 216 Gene3D - 52 119 IPR036638 GO:0046983
Gso1g0214 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Gso1g0214 216 PANTHER TRANSCRIPTION FACTOR BHLH30 9 214 IPR045847 GO:0003700|GO:0006355
Gso1g0214 216 SMART finulus 57 106 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0214 Gso-Chr1 2451721 2453298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0214 50 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 41.429 9.30e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0214 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0214 - - gmx:102667782 413.69