Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0209 ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACCGCGAGGCAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTCTGTGTGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAACTCTTTGAGTACTCAAGCTCGAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATCTAGCAAGGATGGAGCAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTGCTCCAGATTGAGCAAGGAAGTTGCCGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGATGTCACTTGAAACTGGATTGGGCCGTATAATAGAAAAGAAGGGAGAGAAGATTATGAGTGAGATCGCTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTCAAACGTCACTCTTCGGAGTCTGTCACGTACGTTTGCAATTCCACTGGACTCCCCCAAGACTATGAAAGCTCAGATACTTCGCTCAAATTGGGGCTACCATACTCCGGCTGA 612 0.469 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSSSSMKEILERHHLHSKNLARMEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLEMSLETGLGRIIEKKGEKIMSEIADLQRKGMLLMEENERLKRHSSESVTYVCNSTGLPQDYESSDTSLKLGLPYSG* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0209 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso1g0209 203 Coils Coil 150 170 - -
Gso1g0209 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso1g0209 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso1g0209 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso1g0209 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso1g0209 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 170 200 - -
Gso1g0209 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 169 - -
Gso1g0209 203 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Gso1g0209 203 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gso1g0209 203 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso1g0209 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso1g0209 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso1g0209 203 Coils Coil 94 114 - -
Gso1g0209 203 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gso1g0209 203 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso1g0209 203 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 170 200 - -
Gso1g0209 203 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0209 Gso-Chr1 2387252 2393349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0209 1 203 MADS-box Gene Family AT2G22540 65.833 6.49e-107 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso1g0209 K-box 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0209 - - gmx:100808695 378.637