Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0201 ATGGATGCAATCCAAACCGAGAAAATCTATGTTGCTGTTGGGAATGATGTGCAGGATGGATATAAGACTTTGAATTGGGCTCTCAAGAAGTGGAATTCTCATCCAATTTCCATTGTTATTCTCCATCTCACACACAATAGTACCAAGGATTATGTCCATACACCATTTGGGAAACTTCCAGCAAGATCTGTGAGTGAGGAGAAACTACAAATTCTCAGGAAAGATGAGCAGGATAAAATCAACAAGCTGCTTTCCAAGTATATTGCTTTCTGTGGAAAGGTGCCAGCAGAGATTCTTGAAGTTGAGAAATTTGATGAACCTATGCAAAAGCGCGTCATAGACTTGATCTTTGGTCTAGGAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGCCCTCCATGAAATCTAAAGGTGCTATTAATGGATTGTTCCATGTTCATGAGCAAAAGCCTTCTTTCTGTGAATTGTTCGTTATTTGTGGAGGGAAACAAGTTTTCTTAAGAGGGAAGAATGATGAGAAAATCATGGAGGATGATCAGGGGGTCATGGTTGCAAGAATGAGAGATAAGATAACTTTCAAAGATTGGTTAGACAAGTGGTTCAAAGACAAAACCAACGATTCACAAGATAGAATTGCATCACTTTCCTCAAGCAATTTGGAGTCCCCTGTAAACCGAAACCAGTGGGAATTTTACCTCCAGGAAATTGAAAATTACTATCAAGAATTGTTGTCTTCGAAGCCGGAGGAAGGAAGCTGCGTGCAAGAAAATGACGACTCACAGATTGGACCAATTGAGCCACATGTCACTGAACAGAACAATTATAATATGAGTACTGAGGAAAAAATTGAGATCCTGAAAAATAAGCTTAATGAAGGTCAGAAGAACATCCAATTGAAGAGGAAAGAAGCCAAGGATAACATAGAGAGGCATACTAAAGCTGAATGGGCAATTTGTTTATGCAACAGTCGGGCCGAAGAACTAGAAAGTCGAATACGTGAAGAGGTGAGTGCAAGAGAGGAGCTAAAGAAGGAATCAGACGCAGAGAAGGAGCAAACAGAGGAGATGAGAACGGAGGTGGAAGAGAGGAAGAGGAGGCTGAGCTCGCTCACGGAAGTCCAATCGGAGCTCTCAAACAGGCTCCAAATATGGACGTTAGCGAAGATTCGGGCGGAGACGCAGCTGGAGAAGGCGGTGGGGGAGAGGAGGGAGATGGGGAGGGAGATAGAGGAGCTGAGGCGGCAGAGGGATGTGCTCAACAGAAGGATCGAGTTCTGCAAGCAGAAGGACGCCATCGGAATGGCAGCGAGGCTCGCCGAGACAACGTTCTTTGCGTTCAGGGAGTACACCGAGGAGGAGCTCCGGTTGGCGACGGATAACTTCTCCGAGCGCCTCAGGTTGAAGTCCGGCGGGGATTGGACCAATGTGTATAGGGGACGCTTTAACCATTCCACTGTTGCTATCAAGATGCTGCCTTCTTTGTCACCCCAACATTTCCAATCCAAGGTGAGGCTTCTTGGTGATATTAGGCAACCTCATCTGGTTGCCATGGTTGGCTTTTGCTCCGAGCCCAAATGCATAGTTTTGGAATACATGCGCAATGGAAGCTTACGAGACATGCTGTTTTCTAGGAGAAGAAACCGAACCTTACGATGGCATGACCGAATACGAATAGCCACAGAAGTTTGTTCGGGCCTGGGCTTTCTCAATGCAGCTGAGCCAAGGCCCGCTATTCATTGTCATTTGACCCCATCGAAAATCCTCCTAGACCGCCATTTGATTGCAAAGATCACGGGCTTTGGGCTCCATGAATGCCATGATGAACATTGTAATATTGAGTCAGATTTGCGGGCCATAGGGGCTTTGTTAATGCACCTTCTAACTGGAAGAAATTGGGCTGGGCTCGTTGAGGAGGTGATGACGGTAGCTATAGATAGAGAGGCTTTGGGTGGCGTTCTTGATGAGATGGCTGGACAATGGCCATTGGATCTAGCAAGGGAACTTGCGGGCCTGGCTATGAGGTGCATGTCCATCAAAAGCGAGCCCAACTTGGAATTGAGCATTGCAAGGGTTTTAGAGGAACTCAATGAGATAAGAAGAAAGGGGGATGAAATTGTTGGAAGGGAAAGGCGAAAGACAAACATTAATGGTGGATGTATAAATAGAGAGGGATCCAGTGATGTGCCTAGTGTTTTCCTTTGTCCCATACTTCAGGAGGTAATGAAAAACCCACACGTGGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAACACTGGCTGCAATCGGGACGTGACACATCACCAGTGACAAATTTGAGGCTGAAGCACACTTTCCTCACCCCTAATCATACCCTTCGTTCCCTAATTGAGGACTGGCAGACCAACAAATCAACCTGA 2406 0.4559 MDAIQTEKIYVAVGNDVQDGYKTLNWALKKWNSHPISIVILHLTHNSTKDYVHTPFGKLPARSVSEEKLQILRKDEQDKINKLLSKYIAFCGKVPAEILEVEKFDEPMQKRVIDLIFGLGITKLVMGFSFMKPSMKSKGAINGLFHVHEQKPSFCELFVICGGKQVFLRGKNDEKIMEDDQGVMVARMRDKITFKDWLDKWFKDKTNDSQDRIASLSSSNLESPVNRNQWEFYLQEIENYYQELLSSKPEEGSCVQENDDSQIGPIEPHVTEQNNYNMSTEEKIEILKNKLNEGQKNIQLKRKEAKDNIERHTKAEWAICLCNSRAEELESRIREEVSAREELKKESDAEKEQTEEMRTEVEERKRRLSSLTEVQSELSNRLQIWTLAKIRAETQLEKAVGERREMGREIEELRRQRDVLNRRIEFCKQKDAIGMAARLAETTFFAFREYTEEELRLATDNFSERLRLKSGGDWTNVYRGRFNHSTVAIKMLPSLSPQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMRNGSLRDMLFSRRRNRTLRWHDRIRIATEVCSGLGFLNAAEPRPAIHCHLTPSKILLDRHLIAKITGFGLHECHDEHCNIESDLRAIGALLMHLLTGRNWAGLVEEVMTVAIDREALGGVLDEMAGQWPLDLARELAGLAMRCMSIKSEPNLELSIARVLEELNEIRRKGDEIVGRERRKTNINGGCINREGSSDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEHWLQSGRDTSPVTNLRLKHTFLTPNHTLRSLIEDWQTNKST* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0201 801 CDD RING-Ubox_WDSUB1_like 733 774 - -
Gso1g0201 801 ProSiteProfiles Protein kinase domain profile. 463 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0201 801 SMART Ubox_2 732 795 IPR003613 GO:0004842|GO:0016567
Gso1g0201 801 Coils Coil 326 371 - -
Gso1g0201 801 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 797 - -
Gso1g0201 801 Coils Coil 396 430 - -
Gso1g0201 801 ProSiteProfiles U-box domain profile. 728 801 IPR003613 GO:0004842|GO:0016567
Gso1g0201 801 SUPERFAMILY RING/U-box 726 798 - -
Gso1g0201 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 801 IPR013083 -
Gso1g0201 801 Coils Coil 277 315 - -
Gso1g0201 801 MobiDBLite consensus disorder prediction 338 361 - -
Gso1g0201 801 Gene3D Transferase(Phosphotransferase) domain 1 534 718 - -
Gso1g0201 801 SUPERFAMILY Protein kinase-like (PK-like) 443 679 IPR011009 -
Gso1g0201 801 Gene3D Phosphorylase Kinase; domain 1 435 532 - -
Gso1g0201 801 PANTHER OS02G0152300 PROTEIN 5 797 - -
Gso1g0201 801 Pfam U-box domain 729 800 IPR003613 GO:0004842|GO:0016567
Gso1g0201 801 Pfam Protein tyrosine and serine/threonine kinase 472 608 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0201 Gso-Chr1 2290548 2296027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0201 7 801 U-box Gene Family AT5G65500 50.248 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso1g0201 PK_Tyr_Ser-Thr 1.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0201 - - gmx:100786771 1571.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0201 1 2290548 2296027 Gso9g1649 9 40810111 40816141 GST