Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0200 ATGGCTCGTGCTACTAACTGGCTTTCGTTCTCTCTCTCCCCAATGGAAATGCTCCGAACCTCCGAACCTCAGTTCCTTCAATACGACGCCGCTTCCGCTACTTCCTCACATCACTACTACCTCGACAACTTGTACACCAACGGGTGGGGCAACGGGAGCCTCAAGTTTGAGCAGAATCTCAACCACAGTGACGTGAGTTTTGTTGAATCTTCGTCGCAGAGCGTCGGCCACGTGCCGCCGCCGCCGCCGAAGCTGGAGGATTTTCTCGGCGACTCCTCCGCCGTGATGCGTTACTCCGACAGCCAGACGGAGACGCAGGACTCGTCGCTGACGCACATCTACGACCACCACCACCACCACCACCACCACCACGGTTCTACTTCGTACTTCGGCGGTGACCAGCAGGATCTCAAGGCCATTACTGGATTTCAAGCTTTTTCGACCAACTCCGGGTCCGAGGTTGATGATTCTGCATCCATCGGAAAAGCGCAGGCCAGCGAGTTCGGGACTCACTCTATTGAGTCCTCCGGCAACGAGTTCGCCGCGTTCTCCGGTGGCACAACCGGAACCTTGTCGCTCGCCGTTGCACTGAGCTCCGAGAAGGCCGTTGTCGCGGCGGAGTCCAATAGCTCGAAGAAGATCGTGGATACCTTCGGCCAGCGGACTTCTATTTACAGAGGTGTTACTAGGCACCGATGGACAGGAAGATATGAAGCGCATCTATGGGACAATAGTTGCAGAAGGGAGGGTCAAGCCAGAAAAGGGCGTCAAGTTTATTTGGGTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTGTTTCCAATTATTCGAAGGAAGTGGAGGAGATGAAACATGTAACAAAGCAAGAATTTATTGCATCATTGCGGAGGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAGGCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTAGCTGGAAACAAAGATTTATACTTGGGAACATTCGCAACCGAGGAGGAAGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAACGCGGTAACCAACTTTGAGATGAATAGATATGATGTGGAAGCTATAATGAAGAGTTCTCTTCCAGTGGGTGGGGCAGCAAAACGCTTGAGGCTTTCCCTTGAATCAGAGCAGAAAGCTCCTCCTGTGAACAGCAGCAGTCAGCAGCAGAATCCACAGTGTGGTAACGTGAGTGGCAGCATCAATTTCTCAGCCATTCATCAGCCAATTGCTTCAATCCCTTGTGGAATTCCGTTTGATTCAACAACAGCATATTATCCTCACAACCTTTTCCAACATTTTCACCCTACCAACGCTGGTGCAGCAGCGTCTGCTGTTACTTCTGCCAATGCAACCGCACTAACTGCACTGCCAGCATCAGCAGCAACTGAGTTCTTTATTTGGCCTCATCAGTCTTATTGA 1533 0.5108 MARATNWLSFSLSPMEMLRTSEPQFLQYDAASATSSHHYYLDNLYTNGWGNGSLKFEQNLNHSDVSFVESSSQSVGHVPPPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHIYDHHHHHHHHHGSTSYFGGDQQDLKAITGFQAFSTNSGSEVDDSASIGKAQASEFGTHSIESSGNEFAAFSGGTTGTLSLAVALSSEKAVVAAESNSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYSKEVEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLRLSLESEQKAPPVNSSSQQQNPQCGNVSGSINFSAIHQPIASIPCGIPFDSTTAYYPHNLFQHFHPTNAGAAASAVTSANATALTALPASAATEFFIWPHQSY* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0200 510 SMART rav1_2 326 390 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 SMART rav1_2 224 296 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 CDD AP2 325 384 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 SUPERFAMILY DNA-binding domain 325 385 IPR016177 GO:0003677
Gso1g0200 510 CDD AP2 223 292 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 PRINTS Ethylene responsive element binding protein signature 225 236 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 PRINTS Ethylene responsive element binding protein signature 366 386 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 ProSiteProfiles AP2/ERF domain profile. 224 290 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 ProSiteProfiles AP2/ERF domain profile. 326 384 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 507 - -
Gso1g0200 510 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 507 - -
Gso1g0200 510 SUPERFAMILY DNA-binding domain 223 292 IPR016177 GO:0003677
Gso1g0200 510 Pfam AP2 domain 224 282 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 Pfam AP2 domain 326 376 IPR001471 GO:0003700|GO:0006355
Gso1g0200 510 Gene3D AP2/ERF domain 326 386 IPR036955 GO:0003700|GO:0006355
Gso1g0200 510 Gene3D AP2/ERF domain 224 292 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0200 Gso-Chr1 2255360 2260539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0200 83 510 AP2-EREBP Transcription Factor Family AT5G10510 59.646 1.84e-177 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso1g0200 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0200 K09285 - gmx:100777168 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0200 1 2255360 2260539 Gso9g1650 9 40833100 40838312 GST