Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0187 ATGGCAGCACAAGCTGAAATTGAGCATCCTAGGAAGGCATTCGGATGGGCAGCTAGGGATTCTTCCGGTCTTCTCTCCCCTTTCAATTTCTGCAGAAGGGAACCCGGTGAGAAAGATGTGGCATTCAGAGTGTTGTACTGTGGGATATGCCACTCGGACCTCCACAGCATAAAGAACGAATGGGGCACTTCCATCTATCCAATGGTTCCTGGGCATGAGGTAGCTGGTGTAGTAACAGAGGTGGGAAGCAAAGTAGAGAAGTTCAAAGTTGGGGACAAGGTTGGTGTGGGATGCCTGGTTGATTCCTGCCGCACCTGCCAAAACTGCTGTGACAATCTTGAGAATTATTGTCCTCAATCTACGTTCACATATGGTGCCAAATATAGAGATGGCACCATCACATATGGAGGCTACTCTGACTCAATGGTTGCTGAAGAGCATTTTGTGGTTCGCATTCCAGATAGATTACCACTTGATGCTGCTGCACCTCTTCTTTGTGCTGGCATCACTGTGTATAGCCCTCTCAGATATTATGGACTTGACAAGCCTGGTCTGCATGTGGGTGTGGTTGGTCTTGGTGGACTAGGCCATATGGCTGTCAAGTTTGCCAAAGCTTTTGGTGCTAAGGTCACAGTAATAAGTACTTCACCAAACAAAAAGGAAGAAGCAATACAAAATCTTGGAGCTGATTCCTTTCTAATAAGCCGGGACCAAGATCAGGTGCAGGCTGCAATGGGTACTTTTGATGGTATTATTGACACAGTTTCTGCCGTTCATCCTCTCTTACCTCTCATTGGTTTGCTCAAGTCTCATGGAAAGCTTGTAATGGTTGGTGCACCGGAGAAGCCTCTGGAACTGCCTGTTTTTCCTTTACTTGCGGGGAGAAAGATAGTTGCTGGCACTCTGATTGGAGGGCTAATGGAGACGCAAGAAATGATTGATTTTGCAGCGAAACACAATGTGAAACCTGACATTGAAGTCATTCCTATGGACTATGTCAACACAGCAATGGAGCGCCTCCTTAAAGCAGATGTTAAATATCGATTTGTTATTGATATTGGAAACACACTGAAATTCTGA 1080 0.4574 MAAQAEIEHPRKAFGWAARDSSGLLSPFNFCRREPGEKDVAFRVLYCGICHSDLHSIKNEWGTSIYPMVPGHEVAGVVTEVGSKVEKFKVGDKVGVGCLVDSCRTCQNCCDNLENYCPQSTFTYGAKYRDGTITYGGYSDSMVAEEHFVVRIPDRLPLDAAAPLLCAGITVYSPLRYYGLDKPGLHVGVVGLGGLGHMAVKFAKAFGAKVTVISTSPNKKEEAIQNLGADSFLISRDQDQVQAAMGTFDGIIDTVSAVHPLLPLIGLLKSHGKLVMVGAPEKPLELPVFPLLAGRKIVAGTLIGGLMETQEMIDFAAKHNVKPDIEVIPMDYVNTAMERLLKADVKYRFVIDIGNTLKF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0187 359 PANTHER ALDEHYDE REDUCTASE 1 358 - -
Gso1g0187 359 SUPERFAMILY GroES-like 21 184 IPR011032 -
Gso1g0187 359 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 358 - -
Gso1g0187 359 Gene3D - 167 323 - -
Gso1g0187 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 322 IPR036291 -
Gso1g0187 359 CDD CAD1 14 352 - -
Gso1g0187 359 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Gso1g0187 359 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Gso1g0187 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Gso1g0187 359 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Gso1g0187 359 Gene3D - 16 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0187 Gso-Chr1 2135656 2138424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0187 11 358 Monolignol Biosynthesis Gene Families AT4G37990 72.989 1.97e-178 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0187 - K23232 gmx:100816901 690.649