Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0185 ATGAAGGTGGAAAGGGTTTCAATATTCCAGTGGTGGGTTAGAGTAGCTGTGCAGCTCAGCTTAATCTTGCTTGGTGCCTTTTCTGATAGAGTCTCATCAATTAGAAGCGTTTCGACGTCTCCTCCAGTAAAGCTGAATACCGAAAATCCTCACCAGGTGGTGATTAGCAACGGCATCGTTTCCCTCAATTTGTCAAAGCCCGAGGGCCATATCATTGGAATATATAATGGAATTAACAATTTACTTGAGCCAAAAAATAAAGAAGACGATAGAGGGTACTTGGACGTCGTTTGGAACGAACCAGGAAAACCTGGCATATTTGAGAGAATCGATGGGACACATTTCTCAGTCATTGCAGCAAACGAGAATATAGTTGAAATTTCATTTTTAAGAACATGGACAGCTTCCATGAAAGGCTCAAGTGTCCCTATGAACATAGACAAAAGGTATATATTGCGAAGAGGTGATTATGGGTTTTATTCATACGCAATATTTAATCGACCTTCAGGATTACCTGCGGTGGAGGTTTATCAAATTAGGATTGTTTTCAAACTCGACGAAGCCAGGTTCCACTACATGGCCATATCTGATGCTAGGCAAAGGAACATGCCATCTATGAGAGATAGATTATCGGGTCAAAGCCTGGCGTATCCTGAAGCTGTTCTTTTAACCCATGCATCTGAGCCACAATTTAAGGGAGAGGTGGATGACAAATACCAATACTCGAGTGAGAACAAAGATAACACTGTTCATGGCTGGATTACCCAGGATGATTCAGCACCCGTGGGCTTCTGGTTGATAACACCCAGTAATGAGTTCCGCCATGCTGGGCCCATTAAGCAAGACCTTACCTCTCATGTTGGCCCAACTACTCTTTCCATGTTTGTGAGCACTCATTATGCTGGCAAGGAGGTAGCCATGGTATTTGGTGAAGGGGAGACATATAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACTCTGTTCCCAACAAATCTCAGTTTCGGTCTCTCTGGTCAGATGCTGTAGAACAGTTATCGAATGAAGTAAGAAGATGGCCTTATGATTTCGTTGGATCAAAAGATTTCCTTCCACCCAATCAACGAGGAACAGTGACAGGACGACTACTAGTCCTAGATGGGGGAAAGAGAGCTCAACCTGCTAACAATGCTTATGTTGGTCTAGCTTTGCCAGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGTTATCAATTCTGGATTCAAGCTGACAAAGATGGACACTTCTTGATTCAAAATATTGTACCTGGGGATTACAACTTGTATGCATGGGTTCCGGGTTTTATTGGAGATTATAGATATCAAACTAAAATTACCATCAAACCAGGATGCAACATCAACTTGAATTCACTGGTTTATAACCCTCCAAGAAATGGTCCTACTCTATGGGAAATTGGGATCCCAGATCGCTCAGCTGCAGAATTCTATATACCAGACCCTAACCCCAAGTTCACGAACAGATTATTCCAGAACGATAGCCAAGACAAGTTTAGGCAATACGGCTTGTGGGAACGTTACACTGAACTATATCCAAACCATGATCTCGTTTACACTGTTGGTGTATCTGACTATCACAATGACTGGTTTTATGCTCAAGTTACCAGGAGCACACCAGAAAAGACATTCGTGCCAACGACATGGCAAATTCAATTCCAACTTAAAAATATCATAATGCCAGGAAATTACACATTACAAGTGGGGTTGGCATCCGCCAATAATGCTAGACTGGAGGTTAGGTTCAATGACCAGAATGCTAAGCTTCCCCACTTCTCAACAGGGCTAACAGGCGATGACAATGCCATAGCAAGACATGGAATTCATGGATTGTATAGGTTGTATACTATAGCTGTAGGCAGCAATCATTTGGTGAAAGGAAAAAACACCATCTATTTGACACAGTCAAAAGGCATAGGTCCTTTCATGGGACTTATGTATGATTATGTCCGCTTAGAAAGTCCACCAATTAAAAGTACTTGA 2019 0.422 MKVERVSIFQWWVRVAVQLSLILLGAFSDRVSSIRSVSTSPPVKLNTENPHQVVISNGIVSLNLSKPEGHIIGIYNGINNLLEPKNKEDDRGYLDVVWNEPGKPGIFERIDGTHFSVIAANENIVEISFLRTWTASMKGSSVPMNIDKRYILRRGDYGFYSYAIFNRPSGLPAVEVYQIRIVFKLDEARFHYMAISDARQRNMPSMRDRLSGQSLAYPEAVLLTHASEPQFKGEVDDKYQYSSENKDNTVHGWITQDDSAPVGFWLITPSNEFRHAGPIKQDLTSHVGPTTLSMFVSTHYAGKEVAMVFGEGETYKKVFGPVFVYLNSVPNKSQFRSLWSDAVEQLSNEVRRWPYDFVGSKDFLPPNQRGTVTGRLLVLDGGKRAQPANNAYVGLALPGDAGSWQRESKGYQFWIQADKDGHFLIQNIVPGDYNLYAWVPGFIGDYRYQTKITIKPGCNINLNSLVYNPPRNGPTLWEIGIPDRSAAEFYIPDPNPKFTNRLFQNDSQDKFRQYGLWERYTELYPNHDLVYTVGVSDYHNDWFYAQVTRSTPEKTFVPTTWQIQFQLKNIIMPGNYTLQVGLASANNARLEVRFNDQNAKLPHFSTGLTGDDNAIARHGIHGLYRLYTIAVGSNHLVKGKNTIYLTQSKGIGPFMGLMYDYVRLESPPIKST* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0185 672 CDD RGL4_N 52 334 - -
Gso1g0185 672 Pfam Rhamnogalacturonate lyase family 38 235 IPR010325 -
Gso1g0185 672 CDD RGL4_M 368 465 IPR029413 -
Gso1g0185 672 Pfam Polysaccharide lyase family 4, domain III 475 664 IPR029411 -
Gso1g0185 672 Pfam Polysaccharide lyase family 4, domain II 389 462 IPR029413 -
Gso1g0185 672 SUPERFAMILY Galactose-binding domain-like 472 665 IPR008979 -
Gso1g0185 672 Gene3D - 473 665 - -
Gso1g0185 672 Gene3D - 47 332 IPR014718 GO:0030246
Gso1g0185 672 SUPERFAMILY Galactose mutarotase-like 47 328 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gso1g0185 672 SUPERFAMILY Starch-binding domain-like 364 464 IPR013784 GO:0030246
Gso1g0185 672 Gene3D - 364 464 - -
Gso1g0185 672 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 47 668 - -
Gso1g0185 672 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 47 668 - -
Gso1g0185 672 CDD RGL4_C 477 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0185 Gso-Chr1 2109923 2117643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0185 43 667 Polysaccharide Lyase AT1G09890 56.962 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0185 K18195 - gmx:100781089 1383.24