Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0182 ATGGGAAGGGGGAAGATTGTGATTGAAAGGATCGACAATTCCACTAGCCGGCAAGTGACTTTCTCAAAGAGAAGAAAGGGATTGATCAAGAAAGCCAAAGAGCTAGCAATCCTCTGCGATGCACAAGTTGGCCTTGTCATATTCTCCAGCACGGGAAAGCTTTATGAATATGCCAGCACCAGCATGAAATCAATCATCGAGAGATATAACACGTGCAAGGAAGAACATCACCGTCAGATGAATCCAGAATCTGAAGTCAAATTTTGGCAGAGGGAGGCAGAAATTCTAAGGCAGCAACTACAGAATCTACAAGAAAACCATCGGCAATTGATGGGAGAACAGCTATATGGTCTGAGTGTGAGAAACCTACAAGATCTAGAGAATCAACTGGAACTGAATCTCCAAGGTGTCCGTATGAAAAAGGAACAAATTCTAAAAGATGAAATCCAAGAGCTGAACCGAAAGGGGAACCTGATCTTTCAGGAAAATGTGGAACTTTACAAGAAGGTCTTTGGTACAACAGATATGGCCACAACAAGCAGAAATGCATTTGTTCCACTTTCATATGGTATGCATGCTGCAGGAGGGAATCCACAAGAATTGGTCCAACTTCAGCTATGCCAGCCTGAACAAGAAGTTTGTGAGACATCGGACACAGCCACAAAATGA 669 0.4305 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYASTSMKSIIERYNTCKEEHHRQMNPESEVKFWQREAEILRQQLQNLQENHRQLMGEQLYGLSVRNLQDLENQLELNLQGVRMKKEQILKDEIQELNRKGNLIFQENVELYKKVFGTTDMATTSRNAFVPLSYGMHAAGGNPQELVQLQLCQPEQEVCETSDTATK* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0182 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Gso1g0182 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso1g0182 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso1g0182 222 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso1g0182 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso1g0182 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso1g0182 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso1g0182 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso1g0182 222 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Gso1g0182 222 Coils Coil 86 113 - -
Gso1g0182 222 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso1g0182 222 Coils Coil 120 140 - -
Gso1g0182 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso1g0182 222 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gso1g0182 222 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 221 - -
Gso1g0182 222 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0182 Gso-Chr1 2063701 2079300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0182 1 220 MADS-box Gene Family AT2G22630 59.402 1.32e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso1g0182 K-box 6.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0182 K09264 - gmx:100795778 431.409