Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0177 ATGACTCAAGCCAATGGCCACCGTCGTGTTGATCAAACAGTGATTGACATAAAGAAACCGCCGGTGAGCTTCACCGGGGGTCTGGTGTTCGAGTGCCTCACTTACACCGTTACAAAGAAGAAGAAGGTTGAGGAGAAGTGGTCGAATCAAGAGGTGGACCTGCTGCATGAAATCACTAGCTATGCACCAAAGGGTTGCATCACTGCAGTGATGGGCCCTAGTGGCGCAGGAAAGTCCACTCTCTTGGATGGCCTTGCTGGGAGGATTGCGAGTGGGAGCCTCAAAGGGAGGGTCTCCTTGGATGGGGCAACTGTGAGTGCAAGCTTGATCAAGAGAACTTCTGCATATATCATGCAGGAAGATAGGCTTTTCCCAATGCTAACTGTCTATGAGACTTTGATGTTTGCTGCTGATTTTCGTCTTGGACCACTTTCACTTGCTGATAAGAAGCAGAGGGTGGAGAAGCTCATTGACCAGCTTGGCTTAACGTCATCTCGAAACACCTACATAGGAGACGAAGGTACAAGAGGAATATCCGGCGGAGAGCGGCGGCGGGTCTCAATCGGCGTGGACATCATCCACGGCCCATCCCTCCTCTTCCTGGACGAGCCAACCTCAGGGCTAGACTCCACCAGCGCCCACAGCGTGATCGAGAAAGTGCACGACATCGCTCGCGGCGGCAGCACCGTGATCCTCACCATCCACCAGCCCTCATCAAGAATCCAACTCCTCCTCGACCACCTAATCATCCTCGCAAGAGGGCAACTCATGTTCCAAGGCTCACCCCAGGACGTGGCACTCCACCTGAGTCGCATGCCACGCAAAATCCCCAAAGGAGAGAGCCCCATCGAGCTTCTCATTGACGTGATCCAAGAGTATGATCAGTCTGAGGTTGGAGTTGAGGCACTTGCTGAGTTCGCACGCACTGGTGTCAAGCCACCTCCTTTGTCTGGCCAACAACAACACTCTGTGTCTTCTGTTGCTCCGTCCTCGCACCTTAGCCATAGGTATGAGGAAAATTCTCAGGACTTGTCTTACTCGTCGCAAGTGAGTAGAAGGGTCGTTGATGGTTTTGATCACAGTCTCAGAAGTTCCCATAACAACAACACATCAATGTCGTGGAGCACTGGGAATAGTGCGGCGTTTTTGAAATTCACTCCTTCGCGGCTTAAGAATGATCACAAGCTGCAGAATACCGCGAGAACCAATGCTTCACCTGGATACTACGCACACTGGAGTGAAATCCTCGAAGCCACTCCAACACCCCGTAGCAGTGACTACACAGTGAATGAGAAGGACTACCTCGCTCCCTCAAACGCCACACAGGAACACCTTGGAGCAAAGTTTGCAAATTCCTACCTAGGAGAGATTTGGATCCTTATGCGTCGCAACTTCATAAACATAAGGCGCACCCCTGAGCTCTTCCTTTCAAGACTCATGGTTCTCACCTTCATGGGCATCATGATGGCCACCATGTTCTTCAAGCCAAAAGAAACTTTGCAAGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACAGTGTGCCTTTTCTTCTTCTCCTCTAACGACGCCGTCCCGGCCTTCATCCAAGAAAGGTTCATCTTCATAAGGGAAACCTCTCACAACGCCTATAGAGCTTCCACTTACACCATTGCAGGCCTAATCACTCACATGCCCTTTATTCTTCTCCAAGCAACTGCTTATGCCGTCATTGTTTGGTTTGCCCTAAAACTTAGAGGCCCTTTTCTTTACTTCTTGCTTGTTCTCTTCGTTTCTCTTCTTTCAACCAATTCATTTGTTGTGTTTGTGAGCTCAGTGGTTCCAAACTACATCTTGGGTTATGCTGTAGTTATTGCCTTCACTGCCTTGTTCTTCTTGTTCTGTGGATACTTCTTGAACAGCAACGACATTCCCCATTATTGGCGTTGGATGAACAAAATTTCGACCATGACGTACCCTTATGAGGGGCTATTGATGAACCAGTACCAGACCAATGATACCTTTGGGTTTGGGTATCTTGATGGTGCACGGATTACCGGTTTAGATATCTTGAATAGTCTACATATTGACACTGATGAACGTAAGAAGAGGACAATTGTGCTTACAATGTTTGGTTGGGCTGTGCTATATAGGGTTTTGTTTTACTTGGTCCTTCGTTTTGCATCAAAAAACCAAAGGTCGTAG 2184 0.4881 MTQANGHRRVDQTVIDIKKPPVSFTGGLVFECLTYTVTKKKKVEEKWSNQEVDLLHEITSYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGRVSLDGATVSASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGPLSLADKKQRVEKLIDQLGLTSSRNTYIGDEGTRGISGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARGGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPQDVALHLSRMPRKIPKGESPIELLIDVIQEYDQSEVGVEALAEFARTGVKPPPLSGQQQHSVSSVAPSSHLSHRYEENSQDLSYSSQVSRRVVDGFDHSLRSSHNNNTSMSWSTGNSAAFLKFTPSRLKNDHKLQNTARTNASPGYYAHWSEILEATPTPRSSDYTVNEKDYLAPSNATQEHLGAKFANSYLGEIWILMRRNFINIRRTPELFLSRLMVLTFMGIMMATMFFKPKETLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIAGLITHMPFILLQATAYAVIVWFALKLRGPFLYFLLVLFVSLLSTNSFVVFVSSVVPNYILGYAVVIAFTALFFLFCGYFLNSNDIPHYWRWMNKISTMTYPYEGLLMNQYQTNDTFGFGYLDGARITGLDILNSLHIDTDERKKRTIVLTMFGWAVLYRVLFYLVLRFASKNQRS* 728
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0177 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 266 IPR027417 -
Gso1g0177 727 Pfam ABC-2 type transporter 456 662 IPR013525 GO:0016020|GO:0140359
Gso1g0177 727 MobiDBLite consensus disorder prediction 314 348 - -
Gso1g0177 727 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 278 IPR003439 GO:0005524
Gso1g0177 727 Pfam ABC transporter 56 206 IPR003439 GO:0005524
Gso1g0177 727 MobiDBLite consensus disorder prediction 311 348 - -
Gso1g0177 727 Gene3D - 40 272 IPR027417 -
Gso1g0177 727 SMART AAA_5 64 262 IPR003593 -
Gso1g0177 727 PANTHER ABC TRANSPORTER G FAMILY MEMBER 19 9 721 - -
Gso1g0177 727 ProSitePatterns ABC transporters family signature. 178 192 IPR017871 GO:0005524
Gso1g0177 727 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 9 721 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso1g0177 Gso-Chr1 2014329 2018454 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0177 48 261 Calmodulin-binding Proteins AT2G36910 29.680 9.10e-14 73.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0177 K05681 - gmx:100804809 1277.69
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0177 1 2014329 2018454 Gso9g1670 9 41047949 41051699 GST