Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0174 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTACTTGCTCCAAGAAAAGACACTACTTGGAGTAATGCTTTGTCAACTGGGTTGAATGAGTTACTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAAGGTTTAGCTACTTTGAATCCCTCATTTGCTGCATTTTCAACTCCACTAGACCACAGATTTGAATGCCCTTATGGAAGTGAAGCAGCATACCCTTTTGTTGATGGCTTCACATTGCCTGAGCTTGATTCTTCATACACCAGGAATGATGAGTCAGCACCACTTTTGCCACAAGAGGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGGGATAACCAGAGCTTGGAACAAGCAAAAATTGGCTGCAAAATTGAGGAACAAGTGACAGAGATTCCAGTCTTCAACATGGGCTTGTGTGGGGAGAAAAAACCCAAATCAAAGAAACTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCAAAGATTAGCAAGATGGACAGGACCTCCATTCTTGGAGACACAATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATAGAGGAGGGAACAAATCAGATAAACCTCTTAGGCATTTCTAAGGAACTAAAGCCCAATGAAGTAATGGTTAGAAATTCCCCCAAGTTTGATGTTGAGAGAAGAGACCAGGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCAGGATTACTACTGTCCACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGTAGATGTCTCTAG 1005 0.4259 MELSQLGFLDELLAPRKDTTWSNALSTGLNELLLPSGWSFDSFDENQGLATLNPSFAAFSTPLDHRFECPYGSEAAYPFVDGFTLPELDSSYTRNDESAPLLPQEDNPSLEDEEFGFLGRDNQSLEQAKIGCKIEEQVTEIPVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEIEEGTNQINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSGAAEQRNCMNQEEIKQALFRNAGYGGRCL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0174 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Gso1g0174 334 CDD ACT_UUR-ACR-like 260 301 - -
Gso1g0174 334 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
Gso1g0174 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 221 IPR036638 GO:0046983
Gso1g0174 334 SMART finulus 167 216 IPR011598 GO:0046983
Gso1g0174 334 PANTHER - 2 334 - -
Gso1g0174 334 Gene3D - 153 227 IPR036638 GO:0046983
Gso1g0174 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0174 Gso-Chr1 1967554 1969442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0174 152 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.399 6.30e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0174 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0174 - - gmx:100806571 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0174 1 1967554 1969442 Gso9g1674 9 41115628 41117467 GST