Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0171 ATGCACGACATTTTTGTTTTTTCTTTTAAAAAAACTCGTTTGGTTTGTTTGTGTGTTTGGAGTATGATGTCGCCGCCGGCGGTGGTAACGGAGGAGGAGGGGCGGAGCAACGTGTCGTCGACCGTGGCGTCCGGTTCTTCGCAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGAAATTACTTAGGGTTATCTGATTGCTCATCAGTTGATAGCAGTGCCTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGATCCCAATCGCCTGAAAGGGAGCCGGATCTTTTCTCTTTAAGCCCAGCAAAGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACTAAAGACGGGATTTGCTTGTCGGCGCAAAAAACTGTTGTTTCTGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTCGCTGGTAATACAGGGATGAACGCAATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCTATGAAAGAAATACCAAGCAAGTTGCAAGAAAGGCCCTGTTCAACTAAGAATGGAACCGGTCATAACCATACAGGTGCTTCCATCAGTGGCAGCGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCTTTTAGGAAAAACTCGATGGCCACGACAACTAACAAGAACAATGATGAAGTGGATGGGAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACTTATCAGGAACTATCATCTGCCCTTGAGAAGATGTTCCTAAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCATTGACACTTGCAAAAGGCTGAAAATTATGAAAGGTTCTGATGCCATTGGTTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1143 0.4637 MHDIFVFSFKKTRLVCLCVWSMMSPPAVVTEEEGRSNVSSTVASGSSQSLDRFSQNGAGLKERNYLGLSDCSSVDSSASTVPSLCDEKKENMNLKATELRLGLPGSQSPEREPDLFSLSPAKLDEKPLFPLLPTKDGICLSAQKTVVSGNKRGFADTMDGFSQGKFAGNTGMNAMLSPRPSGAQPSAMKEIPSKLQERPCSTKNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFLSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0171 380 MobiDBLite consensus disorder prediction 197 223 - -
Gso1g0171 380 ProSiteProfiles PB1 domain profile. 259 364 IPR000270 GO:0005515
Gso1g0171 380 SUPERFAMILY CAD & PB1 domains 258 361 - -
Gso1g0171 380 MobiDBLite consensus disorder prediction 31 50 - -
Gso1g0171 380 Pfam AUX/IAA family 97 371 IPR033389 -
Gso1g0171 380 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 373 IPR003311 GO:0005634|GO:0006355
Gso1g0171 380 PANTHER AUXIN-INDUCED PROTEIN 35 373 - -
Gso1g0171 380 MobiDBLite consensus disorder prediction 197 221 - -
Gso1g0171 380 Gene3D - 255 373 - -
Gso1g0171 380 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0171 Gso-Chr1 1924012 1928140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0171 263 370 B3 DNA Binding Superfamily AT4G23980 29.630 1.36e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso1g0171 AUX_IAA 8e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0171 K14484 - gmx:547502 701.819