Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0161 ATGAATCTGTGGACGGACGAGAACTCCTCGGTGATGGAGGCCTTCATGTCGTCCTCCGATCTCTCCTCAATCTGGCCCTCGCCGGCGCCGCCGCAATCCACGGCGGTCTTCAATCAGGACACCCTCCAGCACCGCCTGCAGGCCTTGATCGAAGGCGCCCGAGAGACCTGGACCTACGCCATCTTCTGGCAGTCCTCTTATGACTATTCTGGCTCCACTCTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGACGACGACAAAGCCAAAGCCAAGGCCAAGGCCAAGGTCAAGGTCACTTCCGCCGCCGAGCAGGACCACCGCAAAAAAGTTCTCCGCGAACTCAACTCCCTGATCTCCGGCTCCTCCTCCTCCTCCGCCGCCTCCGACGACGTCGACGAGGAGGTCACCGACACCGAGTGGTTCTTCCTGGTCTCCATGACGCAGTCCTTCGTCAACGGCGGAGGACTTCCCGGACAGGCCTTCTTCAACTCCGCTCCGGTGTGGGTCACCGGGGGCGACCGTCTCTCTGCCTCGGCCTGCGAGAGGGCGAGGCAGGGACACGTGTTCGGGCTGCAAACCCTGGTTTGCATACCGTCCGCGAACGGCGTCGTTGAGCTGGGGTCCACCGAGTTAATTTTCCAGAACCCGGATCTGATGAACAAGGTGAAGGTTCTGTTCAATTTCAGCAACAACAACTTCGACATGGGTTCTTCTTGGCCCGCCACCAGCGCCGATCAGGGCGAAAACGACCCTTCCTCGCTCTGGCTCAGCGATCCCGAAGTTAGGGATTCCATTAACACTGTTGCTGCTACCCCTTCGGTTTCGGTTCCTGCACAGACTCAGGGGATTTCGATTTCCAAGACCATGCAGTTGGAAAGTTCTATTCAAACCCCTGGTTCCAGTACTTTAACCGAAACCCCTAGTTCTATTCACGCGATTCCGCAGAACCAGAGCGTCTTCTCCAGAGAATTGAACTTTTCTGAGTATGGTTTCGACCCAAAGACTGGGAACAATCAGAATCACCATTCTCTGAAGCCGGAATCCGGCGAGATTCTCAGCTTCGGCGAGAGCAAGAGAACCTCCTACGGCGGCGTCAATGGGAATTCCAATTCCAATTCCCATTTTTTCTCCGGTCAGTCGCCGTTTGTTGCTGCTGCGGATGAGAACACCAACAAAAATAACATCAACAACAATGGGAAGACAAAGTCACCGAATTCGCGCGGTAGCAACGACGACGGAATGCTTTCCTTCACCTCCGGCGTGATTCTTCCGGCCTCGAATTTGAAGTCCGGTGGCGGCGGCGATTCCGACCACTCGGATCTGGAGGCTTCGGTGGTGAAGGACCCGGTGGTGGAGCCGGAGAAGCGGCCGCGGAAGAGAGGGCGTAAGCCGGCGAACGGAAGAGAGGAACCATTAAACCATGTTGAAGCAGAGAGACAGAGGAGGGAGAAGCTGAACCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCAAAGATGGACAAAGCGTCACTCCTGGGCGACGCCATATCTTACATCACGGAGCTGAAGTCCAAGCTTCAGACCCTCGAATCAGATAAAGATGGAATGCAGAAGCAGCTGGAAGGTGTGAAGAAGGAGCTCGAGAAAACAACCGAGAACGTTTCTTCTAATCACGCGGGTAATAGTAGTAGTTGTAACAACAACAACAAGTTGTCGAATCAGAAGTTAATTGACGTGTTGGAGATGGACGTGAAGATACTTGGGTGGGACGCGATGATAAGGATCCATTGCAGCAAGAAGAACCACCCCGGGGCGAGGTTGTTGACGGCATTGATGGAGTTGGACTTGGACGTGCACCACGCCAACGTAAATTTGGTCAACGATATGACCATGCTACAAGCAACGGTGAAGATGGGAAGTAGGTTTTACACGCAGGAGCAGCTTCGTGCGGCTCTGGCGGCTAAGGTTGGGGATGCACGATGA 1974 0.5507 MNLWTDENSSVMEAFMSSSDLSSIWPSPAPPQSTAVFNQDTLQHRLQALIEGARETWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKVKVTSAAEQDHRKKVLRELNSLISGSSSSSAASDDVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFFNSAPVWVTGGDRLSASACERARQGHVFGLQTLVCIPSANGVVELGSTELIFQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSSLWLSDPEVRDSINTVAATPSVSVPAQTQGISISKTMQLESSIQTPGSSTLTETPSSIHAIPQNQSVFSRELNFSEYGFDPKTGNNQNHHSLKPESGEILSFGESKRTSYGGVNGNSNSNSHFFSGQSPFVAAADENTNKNNINNNGKTKSPNSRGSNDDGMLSFTSGVILPASNLKSGGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGMQKQLEGVKKELEKTTENVSSNHAGNSSSCNNNNKLSNQKLIDVLEMDVKILGWDAMIRIHCSKKNHPGARLLTALMELDLDVHHANVNLVNDMTMLQATVKMGSRFYTQEQLRAALAAKVGDAR* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0161 657 MobiDBLite consensus disorder prediction 390 480 - -
Gso1g0161 657 PANTHER TRANSCRIPTION FACTOR MYC2 32 653 - -
Gso1g0161 657 PANTHER MYC 32 653 IPR045084 GO:0003700|GO:0006355
Gso1g0161 657 MobiDBLite consensus disorder prediction 550 565 - -
Gso1g0161 657 MobiDBLite consensus disorder prediction 546 565 - -
Gso1g0161 657 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 227 IPR025610 -
Gso1g0161 657 Gene3D - 462 552 IPR036638 GO:0046983
Gso1g0161 657 MobiDBLite consensus disorder prediction 390 426 - -
Gso1g0161 657 CDD bHLH_AtAIB_like 467 543 - -
Gso1g0161 657 Coils Coil 516 550 - -
Gso1g0161 657 MobiDBLite consensus disorder prediction 441 480 - -
Gso1g0161 657 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 538 IPR036638 GO:0046983
Gso1g0161 657 Pfam Helix-loop-helix DNA-binding domain 474 519 IPR011598 GO:0046983
Gso1g0161 657 SMART finulus 476 525 IPR011598 GO:0046983
Gso1g0161 657 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0161 Gso-Chr1 1810033 1812606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0161 1 654 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.555 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0161 bHLH-MYC_N 1.4e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0161 K13422 - gmx:100776289 1155.58