Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0152 ATGGCGGCTACTTTAGAATCAGCCTTCATCCTCTTCGCACCTCAACGGTTCTCCAATAGCCATCGTTTCTCTGCAAAAGCACCGATCTCCATCAAGCTCCATGCTTCCACCTCCCTTTTCTTCTCTTCCAAGTCCTCCTTCAAAACGGGAAGACTCTGCTTCCAGTTATGCTCCACTTTGCAAGAGGTAGCAGCAACAGAAGAAACACCTGAGCTAACGCAACCAACAGACAACGTAAAGAAGCTGTACGTGGTTAACTTATCTTGGTCTCTGACGGCGGCAGACATCAATGACCTCTTTGCCCAAAGCGGAACCGTAACCGACGTCGAGATAATAAAGAGCAAAGACGGGAGGAGCAAGGGCTATGCCTTCGTTACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTGTTGATAAATTTGACTCTTATGAATTATCAGGACGGATAATAAGGGTAGAACTTGCAAAGAGATTCAAAAAACCTCCTTCTCCTCCACCTCCTCCAGGTCCCCGTCCTGGAGAGACACGTCATGTAATTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGACAACTCTTCGCTGAGAATTTCAAAACACCATCTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTGGACGATCTGCTGGGTACGGATTTGTTTCTTTTCTTACCAAGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATTCAGTGAAAAGAAAGATAAAGCTGGAAGGGAAAAAGATGAAGACCAAGATAAAGATGCTGGAAGTGAAGAAGATGAAGACGAAGGTTCTGATGCTCGACCGGAAGAATCATAA 870 0.469 MAATLESAFILFAPQRFSNSHRFSAKAPISIKLHASTSLFFSSKSSFKTGRLCFQLCSTLQEVAATEETPELTQPTDNVKKLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAKRFKKPPSPPPPPGPRPGETRHVIYASNLAWKARSTHLRQLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAISTVDGKELMGRPLRLKFSEKKDKAGREKDEDQDKDAGSEEDEDEGSDARPEES* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0152 289 PANTHER OS02G0815200 PROTEIN 9 272 - -
Gso1g0152 289 MobiDBLite consensus disorder prediction 247 289 - -
Gso1g0152 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 256 IPR000504 GO:0003723
Gso1g0152 289 MobiDBLite consensus disorder prediction 270 289 - -
Gso1g0152 289 MobiDBLite consensus disorder prediction 247 269 - -
Gso1g0152 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 250 IPR000504 GO:0003723
Gso1g0152 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 150 IPR000504 GO:0003723
Gso1g0152 289 Gene3D - 174 287 IPR012677 -
Gso1g0152 289 Gene3D - 58 173 IPR012677 -
Gso1g0152 289 PANTHER CHLOROPLAST, PUTATIVE-RELATED 9 272 - -
Gso1g0152 289 SMART rrm1_1 178 252 IPR000504 GO:0003723
Gso1g0152 289 SMART rrm1_1 81 153 IPR000504 GO:0003723
Gso1g0152 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Gso1g0152 289 SUPERFAMILY RNA-binding domain, RBD 79 257 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0152 Gso-Chr1 1698732 1702955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0152 79 283 Eukaryotic Initiation Factors Gene Family AT1G49760 25.000 1.02e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0152 - - gmx:100793319 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0152 1 1698732 1702955 Gso1g0152 1 1698732 1702955 ECH
Gso1g0152 1 1698732 1702955 Gso9g1695 9 41358078 41362185 GST