Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0151 ATGGCTTCACTAGGCAACCCAAAAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAGGGATTTTGTAGCTTGTACTGTCCACAGTGGTGCTATGTAATCTACCCTCCTCCTCCTCCCTTTGAATTTCCCGATGATGATTCAAGTCCAAATTTCTCACCTCTAGTTATTGCAGTCATTGGGGTCTTGGTCAGTGCTTTTCTCCTTGTGAGCTACTACACCATAATATCCAAGTACTGTGGCAGCAGAGAATCTTCACAAAGCGAAAACCACGAAGAAAACGTTGAATTGGAAGAGGATCACAACCCTTCACTCCACGAGCCTTGGCATGCTCCAACAATTGGCTTAGATGAGGCTCTGATCAAGTCCATAACGGTTTGCAAGTACAAGAAAGGTGATGGGTTGGTTGAGGTAACAGATTGCTCCGTTTGTCTAAGTGAGTTTCAAGATGATGAAAGTGTTAGGCTCTTACCTAAATGCAGCCACGCTTTTCATCTTCCTTGCATTGACACATGGCTCAAGTCTCACTCTAGTTGCCCTCTATGTCGTGCTAGCATATTCACCTTCAATGCTGCAGCACTTCATGTTGCTTCCCCTGTCACGGAACCACCTTCAAGGAACGATACTTCTTCAGGTAACCAACGTGCAGATGAAAACATTGTTGCTGTTGCAAGGGACAGTGAATTAGATGCTGTGGAAGGAGAAGTCACACTCACACATGGTGGAGCTGTTTCAAAGAGTGCATTGCGTGCTTTGAGTGATCTAGGCAATTTGAGAGGAAGGCATAGTGTAATTGAGATTAGAGATGAAGGGTATGATTCCATTAGAAGGACGGTTTCTATGGACCATTCATTTCAAAGGGGTAGTGGTCTTTCAATTGCTGATGTTCTGCATGTGAATCAAGAGCATGAAGGGTGTTCTAATGGGGCTGGTCCTTCAAAGAATTCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAAGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCTAGTGGAAGGTTCTCCCTTAGCAGAAATGGCAGAGGAAGGCAATGGGTTCTGCCTGTCTAA 1095 0.4393 MASLGNPKSWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPDDDSSPNFSPLVIAVIGVLVSAFLLVSYYTIISKYCGSRESSQSENHEENVELEEDHNPSLHEPWHAPTIGLDEALIKSITVCKYKKGDGLVEVTDCSVCLSEFQDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAALHVASPVTEPPSRNDTSSGNQRADENIVAVARDSELDAVEGEVTLTHGGAVSKSALRALSDLGNLRGRHSVIEIRDEGYDSIRRTVSMDHSFQRGSGLSIADVLHVNQEHEGCSNGAGPSKNSRGESSKSSYRRKVLHCVLSPIAMKRSFSSGRFSLSRNGRGRQWVLPV* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0151 364 Pfam Ring finger domain 141 184 IPR001841 -
Gso1g0151 364 SMART ring_2 142 183 IPR001841 -
Gso1g0151 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Gso1g0151 364 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 355 IPR044675 -
Gso1g0151 364 SUPERFAMILY RING/U-box 122 190 - -
Gso1g0151 364 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Gso1g0151 364 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 355 - -
Gso1g0151 364 CDD RING-H2_PA-TM-RING 141 184 - -
Gso1g0151 364 MobiDBLite consensus disorder prediction 304 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0151 Gso-Chr1 1693550 1695212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0151 1 315 C3H Transcription Factor Family AT3G03550 42.771 4.41e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0151 - - gmx:100792267 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0151 1 1693550 1695212 Gso1g0151 1 1693550 1695212 ECH
Gso1g0151 1 1693550 1695212 Gso9g1696 9 41365904 41367715 GST