Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0147 ATGGGTAAGAAGAAGCAAAAGAACCCGCAACAATCCTCCGAAACCGACGCCGTTTCAACCCCTTCCAGCATTTTCAGCAAACTCTTCGCCAACGCGCCGGAACAGACCACCGCAACCGCCGCTGCCTCTCTATTTTCCGATGACAATCCCTTTCGAAGAAAATCCGCTCCACTTTCTTACTCAACAAACCGCACTCAAAACCCTAACAATGGCGACCACCCCGTGAACACCGATTCCAGCGAGGAGAAGAAGCGGAAGAGGACCAAAGACAAAACCTCAGCCCCAGCCCCCGACACCGTTTCCGTAATCGAAGCTTTGGAGGAACCGGAGAAGAAGAGGAAACGCGATTCCGACGAAGGAAAAGACCTTAGTGTGGGTGCAGAAGCGATAGGGAAGAGGAAAAGGAAAAGGGACGAAGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGGCTGTGGAGGAAGGGATTGAGAATAAAACCGTTGGGATTAAGAGGAAGACGTTGGATGACCCAGCTGATATGATGGTTTCAAAGGAGGGTTTTGATGACGAGGATAAGCTCTTGAGGACTGTTTTCGTTGGGAATTTGCCCCTCAAGGTGAAAAAGAAGACTCTTTTGAAGGAGTTTAAGAAGTTTGGTGAGGTTGAGTCTGTGAGGATTCGTTCTGTCCCTATACAAGATACCAAGAAACCTAGGAAGGGAGCTATCCTTGCGAAGAAAATAAATGATGCTGCTGATAGTGTTCATGCGTACATTGTTTTCAAAACAGAGCAATCGGCACAGGCTTCTTTGGCACACAACATGTCACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAGAGCACTCCACTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTACAAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTATAGAAGCTATCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAACGGAACTTGAAGCTTCGTGACCGAGAGTTGAGACTCTGTCATGCCAAAGCAGATGCTACCCCGTCTAAAAGGCCAAACCCATCATCAGCACATGCTCCTAGTACCCCTGCAAAAAGGCCAAACCCATCAGCACATGCTCCTAGTACCCCTGCAAAGAAGTTTTCCGTGGCTTCACGGTCTCCATCAAGCAGTAATAACATGTCAAAGTCAAACAGAAAAACCAACACATCTTATCAGGGTCTACGTGCAACCAAATCTGATGTGCACAATAAAATCCAAGGAGGAGAAAAACCAAAAGAACGCAAGACAAAAAGACCTTCAGTAGCTGCCAGAAAGGCTAAAGCAAACTTGGTCAAGGAGAGTGATCTACCAAAACAAGCAGGGATGAAACGCAAGGTTGATAGTCGTACTCCAGACAGCACCCTACGTAATAGGAAAGTAAAAAAGAACAGGTAG 1548 0.4567 MGKKKQKNPQQSSETDAVSTPSSIFSKLFANAPEQTTATAAASLFSDDNPFRRKSAPLSYSTNRTQNPNNGDHPVNTDSSEEKKRKRTKDKTSAPAPDTVSVIEALEEPEKKRKRDSDEGKDLSVGAEAIGKRKRKRDEVEKEWEEKKYGAVEEGIENKTVGIKRKTLDDPADMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLAHNMSLVEGNHIRVDRACPPRKKHKGESTPLYDNKRTVFVGNLPFDVKDEELYKLFCGISNLESSIEAIRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLCHAKADATPSKRPNPSSAHAPSTPAKRPNPSAHAPSTPAKKFSVASRSPSSSNNMSKSNRKTNTSYQGLRATKSDVHNKIQGGEKPKERKTKRPSVAARKAKANLVKESDLPKQAGMKRKVDSRTPDSTLRNRKVKKNR* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0147 515 MobiDBLite consensus disorder prediction 55 75 - -
Gso1g0147 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 283 IPR000504 GO:0003723
Gso1g0147 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 381 IPR000504 GO:0003723
Gso1g0147 515 MobiDBLite consensus disorder prediction 417 450 - -
Gso1g0147 515 MobiDBLite consensus disorder prediction 386 400 - -
Gso1g0147 515 MobiDBLite consensus disorder prediction 479 509 - -
Gso1g0147 515 MobiDBLite consensus disorder prediction 40 146 - -
Gso1g0147 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 233 IPR000504 GO:0003723
Gso1g0147 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 374 IPR000504 GO:0003723
Gso1g0147 515 MobiDBLite consensus disorder prediction 379 515 - -
Gso1g0147 515 MobiDBLite consensus disorder prediction 104 146 - -
Gso1g0147 515 MobiDBLite consensus disorder prediction 76 93 - -
Gso1g0147 515 MobiDBLite consensus disorder prediction 453 467 - -
Gso1g0147 515 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 46 513 - -
Gso1g0147 515 SMART rrm1_1 301 377 IPR000504 GO:0003723
Gso1g0147 515 SMART rrm1_1 190 279 IPR000504 GO:0003723
Gso1g0147 515 MobiDBLite consensus disorder prediction 1 21 - -
Gso1g0147 515 CDD RRM2_RBM34 301 376 IPR034221 -
Gso1g0147 515 Gene3D - 294 387 IPR012677 -
Gso1g0147 515 SUPERFAMILY RNA-binding domain, RBD 294 390 IPR035979 GO:0003676
Gso1g0147 515 CDD RRM1_RBM34 189 279 IPR034220 -
Gso1g0147 515 Gene3D - 183 293 IPR012677 -
Gso1g0147 515 PANTHER RNA-BINDING PROTEIN 34 46 513 - -
Gso1g0147 515 SUPERFAMILY RNA-binding domain, RBD 181 289 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0147 Gso-Chr1 1659627 1664409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0147 191 380 Eukaryotic Initiation Factors Gene Family AT1G22760 26.263 1.24e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0147 K14837 - gmx:100784494 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0147 1 1659627 1664409 Gso1g0147 1 1659627 1664409 ECH
Gso1g0147 1 1659627 1664409 Gso9g1699 9 41396594 41400398 GST