Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0145 ATGGGAAGGTCACCATGCTGTGAAGAGAATGTTGGTGTAAAGAAAGGGCCATGGACGCCAGAAGAAGATGAGAAGCTGATTGATTATATCAGCAAACACGGCCATGGCAGTTGGAGAACACTTCCAAAGCGTGCAGGTCTCAATAGGTGTGGTAAGAGCTGCAGATTAAGGTGGACAAACTATCTGACGCCTGATATCAAGAGAGGCAAATTCAGTGAAGAAGATGAGAGGATTATCATCAACCTTCATTCAGTTCTCGGAAACAAGTGGTCAAAGATTGCAACCCATCTGCCAGGACGAACCGACAATGAGATCAAGAACTATTGGAACACTCACATAAGGAAAAAGCTTCTGAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGCACGTCAAACTTGAGCAGTGCCATGAACACTACTTGGGGCAATAACCCTCTTGGTTTACAACCAGATATCACTCAGCTAGCCAAAATTCAACTTCTGCAAAATCTGTTGCAACTTATGAACAACTATTCATTTGTTAACGTGGGTAATAACCCTTACCTCTTATCCAATCCCAACCTCAACCCTTTATTTCTGAACGGCACAAACCTCTTCCAAACTAATAAGGAGCCTCATGTGGTGTTCAGTGGTAGTGAAGAATATGCTAACCCTGGTTTATACTCTCAAGCACAAAGTGAGTGCTCTCAGCAGGATGTATCAAAATCATGGGCAGATTTAGAGGGTGGATCTATTCCACAAGATACTGATTACAACAAAATTAGCAACACTACTACTTCACGTGAAAATCAAGCAGAAAACCCTCTTCCTGCATTAGTTGCATTCTCTACAAAGATGGGAACGGTCAACCAAATGGACAGTAACATAGCTCAAACGTCCACAGAGTCACCTTCCAACACTTTCTTTGATGATTGGGAGAAGTTGCTTGATGATGAAACAAGCGGTCGTTCCTATTGGAAAGAGATTCTAGACTTGACATCCACTTCTGCGTCACCAATTTTGTGGTAG 1053 0.4274 MGRSPCCEENVGVKKGPWTPEEDEKLIDYISKHGHGSWRTLPKRAGLNRCGKSCRLRWTNYLTPDIKRGKFSEEDERIIINLHSVLGNKWSKIATHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGTSNLSSAMNTTWGNNPLGLQPDITQLAKIQLLQNLLQLMNNYSFVNVGNNPYLLSNPNLNPLFLNGTNLFQTNKEPHVVFSGSEEYANPGLYSQAQSECSQQDVSKSWADLEGGSIPQDTDYNKISNTTTSRENQAENPLPALVAFSTKMGTVNQMDSNIAQTSTESPSNTFFDDWEKLLDDETSGRSYWKEILDLTSTSASPILW* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0145 350 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso1g0145 350 MobiDBLite consensus disorder prediction 263 280 - -
Gso1g0145 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gso1g0145 350 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gso1g0145 350 SMART sant 67 115 IPR001005 -
Gso1g0145 350 SMART sant 14 64 IPR001005 -
Gso1g0145 350 Gene3D - 70 136 - -
Gso1g0145 350 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gso1g0145 350 MobiDBLite consensus disorder prediction 250 280 - -
Gso1g0145 350 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Gso1g0145 350 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gso1g0145 350 PANTHER MYB TRANSCRIPTION FACTOR 1 341 - -
Gso1g0145 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso1g0145 350 CDD SANT 70 113 IPR001005 -
Gso1g0145 350 CDD SANT 17 62 IPR001005 -
Gso1g0145 350 Gene3D - 14 67 - -
Gso1g0145 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0145 Gso-Chr1 1634109 1636689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0145 1 339 MYB Transcription Factor Family AT5G16770 47.740 2.57e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g0145 Myb_DNA-binding 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0145 K09422 - gmx:778082 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0145 1 1634109 1636689 Gso1g0145 1 1634109 1636689 ECH
Gso1g0145 1 1634109 1636689 Gso9g1701 9 41417542 41420025 GST
Gso1g0145 1 1634109 1636689 Gso16g0745 16 14472798 14475517 PCT
Gso16g0745 16 14472798 14475517 Gso1g0145 1 1634109 1636689 PCT