Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0144 ATGTCAGACCGGGGTACCCTCTCCGGTGACTCGGCCGTGGATGATGCTAAGAGCAACAAAAAGGAACACAAAGTTTCTCTGCTGAAACTCTTCTCTTTTGCTGACTTCTATGACTATGTTTTAATGGGTGTTGGGTCTGTTGGGGCAATTGTACATGGTGCTTCTGTTCCCGTTTTCTTTATCTTCTTTGGAAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGAATGGCTTATTTGAAATCAATGTTGAATCAAGATATTAGTCTATTTGATACCGAGGCTTCAACAGGAGAGGTTATTTCTTCCATTACTAGTGACATTATCATTGTTCAAGATGCACTATCCGAGAAGGTGGGGAACTTCATGCACTACATAAGCCGATTTGTAGCGGGCTTTGTTATTGGGTTTGTTAGAGTGTGGCAGATCAGTTTAGTGACACTTTCAATTGTACCCTTGATTGCTCTTGCTGGAGGTCTTTATGCATACGTCACAATTGGGCTCATTGCAAAAGTTCGAAAAGCCTACGTGAGGGCTGGTGAAATCGCTGAAGAGGTGATTGGCAATGTTAGAACGGTTCAAGCATTTGCGGGAGAAGAAAGGGCAGTAAGATCATATAAAGCTGCACTCATGAAAACTTATGTAAACGGTAGAAAAGCAGGTTTGGCAAAGGGCCTGGGCTTGGGCTCAATGCACTGTGTCCTTTTTCTATCATGGTCTTTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATTGCCAATGGAGGCGAGTCTTTCACTACCATGCTCAACGTTGTGATCGCTGGCCTGTCACTGGGGCAGGCAGCACCAGATATATCTGCATTCATTCGAGCAAAGGCAGCAGCTTATCCAATTTTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGTAGCTCAAAAACCGGTCGCAAGTTAGGCAAATTGGAGGGTCATATCCAGTTCAAGAACATCTGTTTCAGTTACCCGTCTCGTCCAGATGTAGCAATATTCAACAACCTGTGTCTTGACATTCCTTCAGGGAAAATTGTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTCATATCATTGATTGAGCGCTTTTATGAACCACTTTCTGGTCAGATACTATTAGACAGGAATGATATCAGGGAACTTGATCTCAAATGGCTTAGGCAGCAAATTGGGCTGGTTAATCAAGAACCTGCGCTTTTTGCTACAAGCATCAAGGAGAACATACTTTATGGAAAAGATGATGCCACTCTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATCAACAATCTTCCTGATAGACTAGAAACTCAGGTTGGTGAGAGAGGTATACAACTTTCAGGAGGGCAGAAGCAAAGGATTGCAATATCTCGTGCAATCGTGAAGAATCCATCAATCCTTTTGTTGGACGAAGCGACTAGTGCTCTGGATGCTGAGTCTGAGAAGAGTGTGCAGGAGGCTCTTGATCGTGTGATGGTTGGGAGAACAACTGTTGTAGTGGCACACAGACTCTCTACCATTAGGAATGCAGATATGATTGCTGTTGTGCAGGGAGGGAAGATTGTGGAAACTGGTAACCATGAAGAGCTCATGGCCAACCCAACTAGTGTTTATGCATCTCTTGTTCAACTCCAGGAGGCTGCTTCTCTACAGCGCCTCCCATCAATTGGTCCTAGCATGGGACGCCAACCAAGCATAACCTACTCAAGAGAATTATCCCGTACAACAACAAGCCTTGGTGGTAGTTTTCGATCAGATAAAGAATCTATTGGCCGGGTTTGTGCTGAAGAAACAGAAAATGCAGGCAAGAAAAGGCATGTTTCAGCAGCAAGGCTGTACTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTGCTGGGACCTTATGTGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCACTTGGAATTTCTCACGCACTTGTATCATACTATATGGACTGGGAGACAACATGTCACGAAGTTAAAAAAATTGCATTCCTCTTCTGTGGAGCCGCAGTTATAACTGTCACTGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGACTAACCCTTCGTGTGAGAGAAATGATGTTTTCTGCTATCTTGAAGAATGAAATTGGCTGGTTTGACGATACAAACAACACAAGTTCCATGCTTTCATCGCAGTTAGAGACTGATGCAACATTATTACGAACTATAGTTGTTGATCGTTCAACAATTCTGTTACAGAATATTGGTTTGGTTGTTGCTTCATTTATTGTTGCCTTCATCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACATATCCTTTGATCATTAGTGGTCATATCAGTGAGAAACTTTTTATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTGGCTGGGGAGGCTGTGAGCAATATACGCACTGTTGCCGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTTTATGCTAATGAGCTCGTTGATCCCTCCAAACGCTCACTTCAACGAGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTAATGGAAAAGGAGCTTGCTAGCTTTAAATCAATTATGAAGGCATTTTTTGTTTTGATAGTAACAGCACTGGCCATGGGGGAGACATTGGCCCTGGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATATCATGTGAGGTTGGAGAAGAGTTGAAGACAGTGGATGGAACAATCGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTAATTATTTTCAAGGATTTCAATCTAAGAGTTCCTGCAGGCAAGAGTGTTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCGGTGATCTCCCTTATACTCAGATTTTATGATCCAACATCCGGAAGGGTGTTAATTGATGGAAAAGACATCACGAGACTTAATCTGAAATCTCTTAGGAGACACATTGGTCTTGTACAACAAGAACCAGCTCTTTTTGCAACATCAATTTATGAAAACATACTTTATGGAAAAGAAGGTGCCTCTGATTCAGAAGTGATTGAAGCAGCTAAGCTTGCCAATGCTCATAACTTCATCAGTGGTCTTCCTGAGGGTTACTCCACCAAAGTAGGTGAAAGAGGAGTGCAACTATCTGGTGGCCAAAGACAAAGGGTAGCCATTGCAAGAGCAGTTCTAAAGAACCCTGAAATCTTGCTTCTGGATGAAGCCACTAGTGCACTTGATGTTGAGTCAGAGCGTATTGTGCAACAAGCATTGGACAGATTAATGCAGAACAGAACTACAGTTATGGTGGCACATAGGCTATCCACTATAAGAAATGCAGACCAAATCTCAGTTTTGCAAGATGGAAAGATAATTGACCAAGGGACTCATTCAAGTCTTATAGAGAATAAAAATGGAGCATACTATAAATTAGTCAACCTTCAACAACAGCAGCATCAATTATAG 3741 0.4261 MSDRGTLSGDSAVDDAKSNKKEHKVSLLKLFSFADFYDYVLMGVGSVGAIVHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISSITSDIIIVQDALSEKVGNFMHYISRFVAGFVIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGESFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLGKLEGHIQFKNICFSYPSRPDVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADMIAVVQGGKIVETGNHEELMANPTSVYASLVQLQEAASLQRLPSIGPSMGRQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEETENAGKKRHVSAARLYSMVGPDWFYGVAGTLCAFIAGAQMPLFALGISHALVSYYMDWETTCHEVKKIAFLFCGAAVITVTVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETDATLLRTIVVDRSTILLQNIGLVVASFIVAFILNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSLQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGISCEVGEELKTVDGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSVALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDITRLNLKSLRRHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIDQGTHSSLIENKNGAYYKLVNLQQQQHQL* 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0144 1246 Gene3D - 992 1246 IPR027417 -
Gso1g0144 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1238 IPR003439 GO:0005524
Gso1g0144 1246 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 339 - -
Gso1g0144 1246 CDD ABC_MTABC3_MDL1_MDL2 366 604 - -
Gso1g0144 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso1g0144 1246 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 987 - -
Gso1g0144 1246 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 18 1242 IPR039421 -
Gso1g0144 1246 CDD ABC_MTABC3_MDL1_MDL2 1002 1240 - -
Gso1g0144 1246 Gene3D ABC transporter type 1, transmembrane domain 90 967 IPR036640 GO:0005524|GO:0016021
Gso1g0144 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso1g0144 1246 SUPERFAMILY ABC transporter transmembrane region 670 983 IPR036640 GO:0005524|GO:0016021
Gso1g0144 1246 Pfam ABC transporter 385 533 IPR003439 GO:0005524
Gso1g0144 1246 Pfam ABC transporter 1021 1169 IPR003439 GO:0005524
Gso1g0144 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 602 IPR003439 GO:0005524
Gso1g0144 1246 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 18 1242 - -
Gso1g0144 1246 Gene3D - 364 630 IPR027417 -
Gso1g0144 1246 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524
Gso1g0144 1246 Pfam ABC transporter transmembrane region 685 955 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso1g0144 1246 Pfam ABC transporter transmembrane region 46 314 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso1g0144 1246 SMART AAA_5 393 585 IPR003593 -
Gso1g0144 1246 SMART AAA_5 1029 1215 IPR003593 -
Gso1g0144 1246 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524
Gso1g0144 1246 SUPERFAMILY ABC transporter transmembrane region 29 336 IPR036640 GO:0005524|GO:0016021
Gso1g0144 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 604 IPR027417 -
Gso1g0144 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1240 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0144 Gso-Chr1 1614939 1624681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0144 37 610 Calmodulin-binding Proteins AT2G36910 38.316 3.19e-111 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0144 K05658 - gmx:100819045 2375.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0144 1 1614939 1624681 Gso1g0144 1 1614939 1624681 ECH
Gso1g0144 1 1614939 1624681 Gso9g1702 9 41434937 41443300 GST