Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0141 ATGACATTGGTTATCAGAGAGAGGAGACACAAACAAGCTCTAATGCTTTCCTTACCAAAACCACATTCAGATTTTCCATTTCAAACACACATACCAGCAGTGCTGCCATCCCCATTTTCCCATGTAGATTCTTCTCCAGGCATCATCAAGGACCTTTCAGACCTTGAGAAACTAGCAGTTCTTGGCCATGGCAATGGCGGCATAGTCTACAAAGTTTATCACACGAAGAACCGTTCCTTTTATGCATTGAAGGTCTTACGCTTGAATGAGAATGGCATCGGCATCCTCGAGGCCGAGATTCTAAAACGAGTGAATTCGCCGTATATAGTAAGGTGTCATGCAGTTTTTGACAATGACAACTGCAGTGAGGGTGACATTGGCTTTGTCATGGAATACATGGAAGGAGGATCGTTGCACGATGTGTTGCAAGAACACCACAGGCTGCCAGAGGAGGTGATCTCGGTGTTGGCTAAGCGTGTTTTGGAAGGACTTAACTATCTGCATGGCATGCACATCGTCCATAGAGATATTAAACCCTCAAACTTACTTGTGAATGACAAGGGTGAGGTGAAGATTGCTGATTTTGGAGTAAGTCATGTAGTGGAAGGAAAGTTTGAGGTAAGCGACTCCAATGCAGGAACATGTGCCTATATGAGCCCGGAAAGGATTGATCCGGATAGATGGGGTGGTGAAAATGCAGACGAGTTTGCAGGAGATGTGTGGGCAACGGGAGTGGTGATGTTGGAATGCTTTTTGGGTTATTTTCCGTTGATCGGTCCAGGGCAGAGACCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGGTGAGAAGCTGGAGATGCCAGAAAAAGCATCGCCAGAGTTTCAAAATTTTGTGAGGAGGTGTCTTGAGAAGAATTGGAGAAAGAGAGCAACAGTTTTAGAGCTTCTTCACCACCCTTTTGTGGGTAGAAACTGTTGCTGTTCCAGTACAGGGCTTGGAGATTATGTTCTTCGGGGTCAAGTTCACTAG 1014 0.4536 MTLVIRERRHKQALMLSLPKPHSDFPFQTHIPAVLPSPFSHVDSSPGIIKDLSDLEKLAVLGHGNGGIVYKVYHTKNRSFYALKVLRLNENGIGILEAEILKRVNSPYIVRCHAVFDNDNCSEGDIGFVMEYMEGGSLHDVLQEHHRLPEEVISVLAKRVLEGLNYLHGMHIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEGKFEVSDSNAGTCAYMSPERIDPDRWGGENADEFAGDVWATGVVMLECFLGYFPLIGPGQRPDWATLMCAICFGEKLEMPEKASPEFQNFVRRCLEKNWRKRATVLELLHHPFVGRNCCCSSTGLGDYVLRGQVH* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0141 337 Pfam Protein kinase domain 56 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0141 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Gso1g0141 337 ProSiteProfiles Protein kinase domain profile. 55 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0141 337 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 5 319 - -
Gso1g0141 337 SMART serkin_6 55 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0141 337 CDD PKc_MAPKK_plant_like 53 321 - -
Gso1g0141 337 Gene3D Transferase(Phosphotransferase) domain 1 130 326 - -
Gso1g0141 337 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Gso1g0141 337 SUPERFAMILY Protein kinase-like (PK-like) 47 317 IPR011009 -
Gso1g0141 337 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 319 IPR045269 GO:0004674|GO:0006914
Gso1g0141 337 Gene3D Phosphorylase Kinase; domain 1 40 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0141 Gso-Chr1 1574330 1575343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0141 1 316 MAP Kinase Kinase Gene Family AT1G32320 53.797 4.06e-109 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gso1g0141 Pkinase 4.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0141 K20604 - gmx:100817973 702.975