Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0139 ATGAGCTTTCAGGACATCGAGGCCGGCCGTTCCTTCGCTTCCCGGCGAAATCTAATCAACGGCAAACAAGACCCCACGCAGGCGGTGGCTTCCGGCATCTTTCAGATCAACACCGCCGTCTCCACGTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTTCAGCGGAGAGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAGCTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCGTGCACTTCTTGTGGAATCCAGAAGACAGGAGGTATTATTCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGTCGCAGATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAGCAATGATTGATGATATCGGGTCCAATATTGAGCATTCCCATGAAGCAACTGCGCAAGCAAAATCTCAACTTGCCAAAGCTTCAAAGACGCAAAGATCAAATTCATCTTTGACATGCTTGCTTCTGGTGATATTCGGGATCGTGCTTCTAATCGTCATCATTGTTCTTGCTGCTTAG 822 0.4647 MSFQDIEAGRSFASRRNLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSAKLKQASEIDHNVEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQALLPSSYTASEVDIGSDKTPEQRALLVESRRQEVLFLDNEISFNEAIIEEREQGIQEIQSQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0139 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso1g0139 273 SUPERFAMILY t-snare proteins 22 235 IPR010989 GO:0016020|GO:0016192
Gso1g0139 273 SMART tSNARE_6 175 242 IPR000727 -
Gso1g0139 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Gso1g0139 273 CDD SNARE_Qa 183 241 - -
Gso1g0139 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Gso1g0139 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Gso1g0139 273 SMART SynN_4 13 127 IPR006011 GO:0016020
Gso1g0139 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Gso1g0139 273 Gene3D - 20 133 - -
Gso1g0139 273 CDD SynN 23 148 IPR006011 GO:0016020
Gso1g0139 273 Pfam SNARE domain 217 268 IPR000727 -
Gso1g0139 273 Gene3D - 174 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0139 Gso-Chr1 1563274 1568390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0139 1 261 SNARE and Associated Proteins AT5G46860 77.395 1.64e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0139 - K08488 gmx:100810149 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0139 1 1563274 1568390 Gso1g0139 1 1563274 1568390 ECH
Gso1g0139 1 1563274 1568390 Gso9g1707 9 41490289 41495527 GST
Gso1g0139 1 1563274 1568390 Gso16g0744 16 14348329 14352380 PCT
Gso16g0744 16 14348329 14352380 Gso1g0139 1 1563274 1568390 PCT