Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0130 ATGGTGGAAAGAAGAGTGACTTTATCAAAGGAAGCTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCAAAATTTGTCACTGCCACCCAGACAAGTGTTGCTAACATGATGAGCAGAAGTGGAAATGCTTTAAGAGCTTCAGCATCATGTGGCCCAAGATTTCATGGTAATGCTAATGTCTTTTCCAAGCGCAAGGTGGATAAGTTTGATACAAATGACCTGGATTGGACTGATAAAATTCTAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTAATTTATTTGCAAAAGATTGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCCCCTTTGAGTGCTTCAGTACCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCCCTTCGCCTTGCTGAGTGGGATACTGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTTCGCGATTTTGAGAAAATGGCAAACAAGGTATTTGCACGAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATATTTGGAAAAAGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGACCAGCTTGGGAACAGCAAATGGAACTTGAAGAAACTTTCAAGGTTGCCCAAATCGATTTTGCGGCTGTTGGAAACATCAATTCCGGGAGTAACGGAACCCATGCTATACATTGGAATGCTGTTTAGTATCTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGCATTAACTATCATCACTGTGGGGCATCAAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGATTTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACACTATTTCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTGTACAAGGCTGTTCAAAAGCCAGGGGAGTTTATAATAACGTTCCCTAGGGCATATCACGCTGGCTTCAGTCATGGTTTCAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTGTTGCTAGCAGAAGATATGCACTTCTTAACAGGGTACCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTTCGTACATGCTTGGAACTTGAAGATTCTGACTTTCCTTCTCCAGACTTGTTTTCTCATAATAGTATTAAGATTTCATTTGTTAACTTGATGCGTTTCCAACATCGTGCTCGATGGTTCCTTACGAAATCAAGGGCGGGTATAAGTGTTTCTTTTCATTCCCATGGCACGATTCTCTGTAGCCTCTGCAAACGTGACTGTTACATAGCTTATGTTGGCTGCAACTGTCACAAGCATCATGTATGCCTACGTCATGATGCTGATTCTCTTGACTTCAACTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATTGGATGAGATAAGGAAGCAAACTAAAAGTGACCAGAACATGTATGCATATCCTTTGTCAAATATGTTTCAGGGAGCCGAGGCAAATGGATACACGCCTTATTGTGAGCTAAAACTTGATTCTGTTGCTGAATTTTATGCAACTCCAGAGCACTCAACAAATAATCAAGAATACAGTTCACAATATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAAAACCAGTGGTGTCTGAGGTTTCCTTTTCTTCTGCCACATCCACTCTTTGTTCTCTTTCAGAATCTCTTGAGAGCTTTTCCGCTCCCAAAAATCAGGCTGAGGAGCATATTAACATCAATGCAACAAGTATTATTGATTTTGAAGAGTTTGCTGAAAGAATATCCAACAGTGCTTGTGAATCTTCATTATCTCCTGCTGTGTATCATGAAAGGTCGGTTAAACCACGGGGTGATCTTCAGAGATTTGATAAAAAACCCGTTGTAAACGAGAGTGATGATTCTGATTCAGAGATATTTAGGGTAAAACGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGCTATGTCTTCAAAACATACTGCGCAGCAGCAGGGACTTAAACGACTGAAGAAAATCCTTCCTGAAGGAAAGAGCGGGCAACCAATGGATTTCAGTAGAAGCAATGAATCAAGTTACAAATACGGTCACCCTGTTAACCATAAAGGTCATGCTGAAATTTCGTCTAGGGACAGATTTGCAACGGGTAATGGTATTCCCATTTCTATAAGATGTAAGAAGTTAGGCAACGAGGAAATAAGCATGCAACGAGATCACAACCGGAGAGATAGGTTGCAGCAGACATTTAGGGAACCACCTTCCATGGAGCTTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCATTTTTAGGCTTAGAGAGCAGCAGATCGAATTGA 2580 0.4097 MVERRVTLSKEARNGLEFLKRKRLQRAKFVTATQTSVANMMSRSGNALRASASCGPRFHGNANVFSKRKVDKFDTNDLDWTDKILECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSILRLLETSIPGVTEPMLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAVASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSPDLFSHNSIKISFVNLMRFQHRARWFLTKSRAGISVSFHSHGTILCSLCKRDCYIAYVGCNCHKHHVCLRHDADSLDFNCGSKHTLYLREDIMDMEAAAKMFEQEDGILDEIRKQTKSDQNMYAYPLSNMFQGAEANGYTPYCELKLDSVAEFYATPEHSTNNQEYSSQYQSVFVHCSENQKPVVSEVSFSSATSTLCSLSESLESFSAPKNQAEEHININATSIIDFEEFAERISNSACESSLSPAVYHERSVKPRGDLQRFDKKPVVNESDDSDSEIFRVKRPSSLKAERRNMNDAMSSKHTAQQQGLKRLKKILPEGKSGQPMDFSRSNESSYKYGHPVNHKGHAEISSRDRFATGNGIPISIRCKKLGNEEISMQRDHNRRDRLQQTFREPPSMELEPKRLKVRGPSFLGLESSRSN* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0130 859 MobiDBLite consensus disorder prediction 696 747 - -
Gso1g0130 859 SMART cupin_9 231 404 IPR003347 -
Gso1g0130 859 MobiDBLite consensus disorder prediction 813 859 - -
Gso1g0130 859 Gene3D Cupin 87 435 - -
Gso1g0130 859 Pfam JmjC domain, hydroxylase 264 387 IPR003347 -
Gso1g0130 859 ProSiteProfiles JmjC domain profile. 234 404 IPR003347 -
Gso1g0130 859 PANTHER LYSINE-SPECIFIC DEMETHYLASE 55 854 - -
Gso1g0130 859 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 55 854 - -
Gso1g0130 859 MobiDBLite consensus disorder prediction 696 736 - -
Gso1g0130 859 MobiDBLite consensus disorder prediction 755 774 - -
Gso1g0130 859 SMART JmjN_1 86 127 IPR003349 -
Gso1g0130 859 ProSiteProfiles JmjN domain profile. 87 128 IPR003349 -
Gso1g0130 859 MobiDBLite consensus disorder prediction 813 844 - -
Gso1g0130 859 Pfam C5HC2 zinc finger 484 535 IPR004198 -
Gso1g0130 859 Pfam jmjN domain 88 120 IPR003349 -
Gso1g0130 859 SUPERFAMILY Clavaminate synthase-like 165 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0130 Gso-Chr1 1466979 1473486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0130 84 543 JUMONJI Transcription Factor Family AT2G34880 33.083 3.00e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso1g0130 JmjC 3.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0130 - - gsj:114408462 1731.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0130 1 1466979 1473486 Gso1g0130 1 1466979 1473486 ECH
Gso1g0130 1 1466979 1473486 Gso9g1715 9 41575463 41581878 GST