Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0129 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACGTAGTAGTAAACTCAGACACTCTCTTCTCCTCCTCGATCCAGAACTCTAGCTTCAACTTCATCCCCACCATGCCCTTTCAACCTTATCCTTCCATGAAAGAAGAAGATGGGATCTTGCGAGGGAAGGAAGAGATGGAAAGTGGATCAGGAAGTGAACAATTAGTTGAAGACAAATCAGGGTATGAACAAGAGAGTCATGAAGAACCCACAAAGAAGAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAATCTTTGTTCAAGGAATGCCCACACCCGGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGTCTTAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGACCGGGCAGATAATATGATACTTAGAGCTGAGAATGAGACTCTAAAGAGTGAGAATTATCGGTTACAAGCTGCACTGCGTAACGTTATTTGTCCCAACTGTGGTGGCCCGTGCATAATGGGTGCTGATATGGGTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAGTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAACAATGGCAGCAGATCCTACTCTAATGGCCCCTTCATTGGATTTGGACATGAACATGTACCCAAGGCACTTTTCGGATCCCATTGCTCCATGCACAGAAATGATTCCTGTGCCAATGTTGCCTCCCGAAGCTTCACCGTTTTCTGAGGGTGGTGTTTTAATGGAAGAAGAGAAGTCTCTGGCCTTGGAGCTTGCGGCTTCCTCTATGGCTGAACTTGTGAAGATGTGTCAGACAAATGAACCACTTTGGATCCAAAGCAGTGAGGGTGAAAGGGAAGTGCTCAATTTTGAAGAGCATGCAAGAATGTTTGTTTGGCCTCAGAATCTCAAGAACCGAAGTGAGCTAAGGACAGAAGCTAGCCGTGACACTTCTGTGGTTATAATTAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCCGGTCTTGCAAGCGGGACTCTTCAGCTGATGTGCGCAGAATTCCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGATATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTACCCTAGATACTGCAGGAGGTCCTCTGGCTGCGTTATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTGGAGCATGCAAAAGTAGAAGAGAAACCTGTGCATCAGATATTCTGCAATTATGTGTACAGTGGAATGGCATTTGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGTGAAAGGGTCGCAAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCGCCAGATGCGCGAAAGAACTTGATGAAACTAGCCCAAAGAATGATAAAAACGTTTAGCCTTAACATGAGTACCTCTGGTGGTCAATCATGGACAGCCATATCAGATTCCCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCTAATGGCGTGATTCTAAGTGCAGTTTCAACCACTTGGTTGCCCTATTCTCACACCAAGGTCTTTGATCTCCTCAGGGATGAACGCCACAGATCTCAGATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATGTAGCAAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAATCTGGAAGCCTAGTAGTGTACACAACCATCGACGTGGATGCGATCCAGCTAGCCATGAGTGGCGAGGACCCTTCTTGCATTGCACTTCTTCCCCAAGGCTTCAAGATAGTGCCAATGCTATCATCACCCATCACCGATACAACAAACTCATCAGAGCCTCCAATATCTCTCAACAACAACTCAGGTGGTTGCCTCTTAACAATGGGGGTGCAGGTTCTCGCGAGCACAATCCCTTCTGCAAAGCTCAACCTCTCGAGCGTCACCGCCATCAACAACCACCTTTGCAACACCTTGCACCAGATTGAAGCTGCTCTTTCTTCTACTAACTCCCATGAGAACGGCTTCTTCCTTTGCACTGAACCCACCAAGCAGTGA 2370 0.4591 MYGDCQVMSSMGGNVVVNSDTLFSSSIQNSSFNFIPTMPFQPYPSMKEEDGILRGKEEMESGSGSEQLVEDKSGYEQESHEEPTKKKRYHRHTARQIQEMESLFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNMILRAENETLKSENYRLQAALRNVICPNCGGPCIMGADMGFDEHQLRIENARLREELERVCCLTTRYTGRPIQTMAADPTLMAPSLDLDMNMYPRHFSDPIAPCTEMIPVPMLPPEASPFSEGGVLMEEEKSLALELAASSMAELVKMCQTNEPLWIQSSEGEREVLNFEEHARMFVWPQNLKNRSELRTEASRDTSVVIINSVTLVDAFLDAQKWMELFPTIVSRAKTVQIISSGASGLASGTLQLMCAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPDARKNLMKLAQRMIKTFSLNMSTSGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDTLSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDAIQLAMSGEDPSCIALLPQGFKIVPMLSSPITDTTNSSEPPISLNNNSGGCLLTMGVQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSSTNSHENGFFLCTEPTKQ* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0129 789 SMART HOX_1 84 147 IPR001356 GO:0003677
Gso1g0129 789 MobiDBLite consensus disorder prediction 56 85 - -
Gso1g0129 789 SUPERFAMILY Bet v1-like 277 512 - -
Gso1g0129 789 CDD homeodomain 86 144 IPR001356 GO:0003677
Gso1g0129 789 SUPERFAMILY Homeodomain-like 74 144 IPR009057 -
Gso1g0129 789 SMART START_1 285 510 IPR002913 GO:0008289
Gso1g0129 789 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Gso1g0129 789 CDD START_ArGLABRA2_like 280 509 - -
Gso1g0129 789 Pfam START domain 286 510 IPR002913 GO:0008289
Gso1g0129 789 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Gso1g0129 789 Gene3D - 70 156 - -
Gso1g0129 789 Gene3D - 286 494 IPR023393 -
Gso1g0129 789 Pfam Homeodomain 86 141 IPR001356 GO:0003677
Gso1g0129 789 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 778 IPR042160 -
Gso1g0129 789 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
Gso1g0129 789 MobiDBLite consensus disorder prediction 56 91 - -
Gso1g0129 789 PANTHER - 63 778 - -
Gso1g0129 789 SUPERFAMILY Bet v1-like 537 767 - -
Gso1g0129 789 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0129 Gso-Chr1 1443731 1450497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0129 8 773 Homeobox Transcription Factor Family AT5G46880 56.988 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso1g0129 START 1.3e-38 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0129 - - gmx:100793658 1558.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0129 1 1443731 1450497 Gso1g0129 1 1443731 1450497 ECH
Gso1g0129 1 1443731 1450497 Gso10g2123 10 48234261 48241078 ECH
Gso1g0129 1 1443731 1450497 Gso9g1716 9 41595838 41602722 GST