Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0121 ATGGGCAGCAGTGAGATGGATAAAACTCCAAAAGAGAAGGAGTCAAAGACGCCGCCACCACCACCTACGTCACAGTCTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGCAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCAGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAACCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGTGGTGAGAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGCAGTGATGCCAATTCTCAAAATGACTCTCAATTGAAATCTGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTTAGCATATACTGCTCAAAATGGGGGACTAAATACACCTCATACAGTAGTCAATCAAACTATGTCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACGACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCATCCAACATTCCTGCACTTGGCAGAAAGGTTCCATCTACTGCAGTTGCTGGAGGGATGGCTACTGTTGGATCTCGGGATAGTGCTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGTAGGTCCAGGTTGCGAAAGCAGGCTGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCTGAAGTAAATCGAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAGAGGCCATGCCGGGCGGTCAGTAG 1239 0.4722 MGSSEMDKTPKEKESKTPPPPPTSQSSTTSTGTINPEWPGFQAYSPIPPHGFLASNPQAHPYMWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIHSKSGESASEGEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGSLAYTAQNGGLNTPHTVVNQTMSIIPISAGGAPGAVPGPTTNLNIGMDYWGTPASSNIPALGRKVPSTAVAGGMATVGSRDSAQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNRIRSDYEQLVSENSALKERLGELPANDDHHRSCRNDQHVGNDTQQSGQTEAMPGGQ* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0121 412 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Gso1g0121 412 MobiDBLite consensus disorder prediction 291 333 - -
Gso1g0121 412 MobiDBLite consensus disorder prediction 1 15 - -
Gso1g0121 412 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 410 - -
Gso1g0121 412 MobiDBLite consensus disorder prediction 1 42 - -
Gso1g0121 412 Gene3D - 310 364 - -
Gso1g0121 412 SUPERFAMILY Leucine zipper domain 310 366 IPR046347 GO:0003700|GO:0006355
Gso1g0121 412 Coils Coil 327 375 - -
Gso1g0121 412 CDD bZIP_plant_GBF1 312 362 IPR045314 GO:0003700|GO:0006355
Gso1g0121 412 Pfam Disordered region downstream of MFMR 135 274 - -
Gso1g0121 412 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 309 372 IPR004827 GO:0003700|GO:0006355
Gso1g0121 412 MobiDBLite consensus disorder prediction 377 393 - -
Gso1g0121 412 Pfam bZIP transcription factor 307 369 IPR004827 GO:0003700|GO:0006355
Gso1g0121 412 SMART brlzneu 307 371 IPR004827 GO:0003700|GO:0006355
Gso1g0121 412 MobiDBLite consensus disorder prediction 146 223 - -
Gso1g0121 412 MobiDBLite consensus disorder prediction 111 223 - -
Gso1g0121 412 MobiDBLite consensus disorder prediction 373 412 - -
Gso1g0121 412 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 314 329 IPR004827 GO:0003700|GO:0006355
Gso1g0121 412 MobiDBLite consensus disorder prediction 394 412 - -
Gso1g0121 412 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 410 IPR044827 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0121 Gso-Chr1 1338202 1348488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0121 1 406 bZIP Transcription Factor Family AT2G35530 62.712 5.04e-162 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso1g0121 MFMR_assoc 1.4e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0121 K09060 - gmx:100101882 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0121 1 1338202 1348488 Gso1g0121 1 1338202 1348488 ECH
Gso1g0121 1 1338202 1348488 Gso9g1725 9 41685629 41694519 GST