Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0115 ATGGGCTACGAAGACAATCCGTATCGTGACGAGGACGGAGAGCCCTTGATGGACTACGACGACATTCAATCCGATCGCGAGCCATCTCCAGAGCCTCGCCGCCAGGACGACGATTTCGATGAGGACGTCGACGAGTGGCGCGGCCGTGATCGGTCGCAGACGCCGGTCTATGACACCGATCCGTCGCGGTCGAAGCCGCGGAAGAGGCTGATCAAGAAGAGCGACGCCGGGAAGCAGGCGGTGGAGCCGGAGCTTGAGGATGAGGACGTGGAGGGGTATGTTCCGGAGGCGATGTTCGACGAGGCGGACACTGGAAGGAAGAGGAAGAAGGGGAAGGAGGGTGGGAGTGGGAAGAAGGAGAAGAGGATGAAGGGGGAGAAGAGTTTTGGGAGCAGCGGTGGGAAGAGTGGGTCCAAATTTGGGAGTGGAAAGAAAGGGTTTGGTGGGAAGGCAGGGAAGGATCATGATGGTGAAGTTAAGGAGATGTGGGATACAATTGCTGGGGGAGATTCTGAGGATGATCAAGAGGGTGTCAGGAATGTGGATGATGACAACTTCATAGATGACACTGGAGTGGAACCTGCTTATTATGGTAGTGATGAACCACGTTCTCCTGTTGATGCTCCCCAGGCGGAGGAGGGTGAAGAGGATGAAGAAATTAAGGATCTTTTCAAGATAGGTAAGAAAAAGAAGAAGAATGAGAAAAGTCCAGCAGAAATAGCGTATTTAGTTGAGACTGTCATGGCTGAGCTTGAGGTTACAGCTGAGGAGGATGCTGAACTTAATAGACAGGGAAAGCCTGCCATTAATAAACTCAAGAAGTTGAATCTTCTGACTGAAGTCCTCTCAAAGAAACAGCTTCAACTAGAGTTTTTAGATCATGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATAAATATACGCTCGGAAGTTTTGAAGATATTGAATGATTTTCCTATAGATCTAGAGCAGTATGATAGAAGAGAACAGCTGAAAAAGAGTGGTCTGGGAAAGGTCATTATGTTTTTATCAAAGTCTGATGAAGAAATCAGTGCAAATAGGAAACTAGCCAAGGAGCTGGTTGATAAGTGGAGCCGGCCTATATTTAATAAGAGTACCCGGTTTGAAGACATGAGAAATGTGGAGGATGATAGGGTTCCTTATCGGAGGCCATCAGTTAAAAAGCCGGCAAATAAATCTGCAGGAATGGAATCTAGGGACAGTGATCTTGATTTGGAACTTTCACAGCCTAGGTCTGGACAGTCCTCTTCTAGGCAGCATGCATCAAGGCCGGAAGCAACACCTTTGGATTTTGTGGTCCGTCCCCAGTCTAAAATTGATCCAGAAGAAATTAGAGCACGAGCAAAACAAGCTGCACAAGATCAGCAGCGTATGAAGATGAATAAGAAATTGCAGCAATTGAGGGCACCAAAAAAGAAGCAGCTTCAGGCTACAAAACTGAGCGTGGAAGGTCGTGGTATGATCAAATATTTATAA 1527 0.4735 MGYEDNPYRDEDGEPLMDYDDIQSDREPSPEPRRQDDDFDEDVDEWRGRDRSQTPVYDTDPSRSKPRKRLIKKSDAGKQAVEPELEDEDVEGYVPEAMFDEADTGRKRKKGKEGGSGKKEKRMKGEKSFGSSGGKSGSKFGSGKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDQEGVRNVDDDNFIDDTGVEPAYYGSDEPRSPVDAPQAEEGEEDEEIKDLFKIGKKKKKNEKSPAEIAYLVETVMAELEVTAEEDAELNRQGKPAINKLKKLNLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRSEVLKILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEISANRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPYRRPSVKKPANKSAGMESRDSDLDLELSQPRSGQSSSRQHASRPEATPLDFVVRPQSKIDPEEIRARAKQAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMIKYL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0115 508 MobiDBLite consensus disorder prediction 44 65 - -
Gso1g0115 508 MobiDBLite consensus disorder prediction 148 186 - -
Gso1g0115 508 MobiDBLite consensus disorder prediction 100 128 - -
Gso1g0115 508 Pfam TFIIS helical bundle-like domain 323 378 IPR017923 -
Gso1g0115 508 PANTHER PROTEIN IWS1 HOMOLOG 1 1 508 - -
Gso1g0115 508 ProSiteProfiles TFIIS N-terminal domain profile. 298 381 IPR017923 -
Gso1g0115 508 MobiDBLite consensus disorder prediction 453 469 - -
Gso1g0115 508 PANTHER PROTEIN IWS1 HOMOLOG 1 1 508 IPR044204 GO:0009742|GO:0032784
Gso1g0115 508 MobiDBLite consensus disorder prediction 424 440 - -
Gso1g0115 508 MobiDBLite consensus disorder prediction 1 36 - -
Gso1g0115 508 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 236 384 IPR035441 -
Gso1g0115 508 MobiDBLite consensus disorder prediction 396 493 - -
Gso1g0115 508 MobiDBLite consensus disorder prediction 1 219 - -
Gso1g0115 508 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 293 381 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0115 Gso-Chr1 1249195 1253910 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso1g0115 Med26 8.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0115 K17498 - gmx:100812819 867.455